myRT

myRT report for GCA_001078425.1_Clos_bolt_WAL_14578_V1

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Seq: KQ235846.1 [Clostridium] bolteae WAL-14578 genomic scaffold supercont1.2, whole genome shotgun sequence (1330539 bp)
Overview 1 RT 1: 345920-352591 bp 2 RT 2: 438410-443656 bp Neighborhood of RT #1 [345920, 352644] PBP2_TRAP_Siap HpcH RVT-GII GIIM RVT-GII PRK08270 NrdH Neighborhood of RT #2 [438410, 443685] DDE_Tnp_1 DDE_5 RVT-GII GIIM RVT-GII MglA AraH Feature: gene Location: 345920-347014 bp Ori: KMW21790.1 Feature: domain Description: PBP2_TRAP_Siap Location: 346100-347000 bp Feature: domain Description: PBP2_TRAP_Siap Location: 3461 00-347000 bp Feature: gene Location: 347029-347802 bp Ori: KMW21791.1 Feature: domain Description: HpcH Location: 347035-347785 bp Feature: domain Description: HpcH Location: 347035-347785 bp Feature: gene Location: 348032-348841 bp Ori: KMW21792.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348038-348392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348038-348392 bp Feature: domain Description: GIIM Note: maturase Location: 348446-348674 bp Feature: domain Description: GIIM Note: maturase Location: 348446-348674 bp Feature: gene Location: 349012-349676 bp Ori: KMW21289.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349021-349648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349021 -349648 bp Feature: gene Location: 349917-350213 bp Feature: gene Location: 350224-352644 bp Ori: KMW21291.1 Feature: domain Description: PRK08270 Location: 350230-352210 bp Feature: domain Description: PRK08270 Location: 350230-35221 0 bp Feature: domain Description: NrdH Location: 352414-352591 bp Feature: domain Description: NrdH Location: 35241 4-352591 bp Feature: gene Location: 438410-439078 bp Ori: KMW21376.1 Feature: domain Description: DDE_Tnp_1 Location: 438452-438920 bp Feature: domain Description: DDE_Tnp_1 Location: 438452-438920 bp Feature: gene Location: 439066-439698 bp Ori: KMW21377.1 Feature: domain Description: DDE_5 Location: 439222-439588 bp Feature: domain Description: DDE_5 Location: 439222-439588 bp Feature: gene Location: 440180-440728 bp Ori: KMW21378.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440207-440360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440207-440360 bp Feature: domain Description: GIIM Note: maturase Location: 440420-440645 bp Feature: domain Description: GIIM Note: maturase Location: 440420-440645 bp Feature: gene Location: 440725-441222 bp Ori: KMW21379.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441091-441166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441 091 -441 1 66 bp Feature: gene Location: 441990-442751 bp Ori: KMW21380.1 Feature: domain Description: MglA Location: 442002-442731 bp Feature: domain Description: MglA Location: 442002-442731 bp Feature: gene Location: 442732-443685 bp Ori: KMW21381.1 Feature: domain Description: AraH Location: 442747-443656 bp Feature: domain Description: AraH Location: 442747-443656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_TRAP_Siap (cd13672), HpcH (COG3836), RVT-GII, GIIM (pfam08388), PRK08270 (ribonucleoside triphosphate reductase), NrdH (cd02976), DDE_Tnp_1 (pfam01609), DDE_5 (pfam13546), MglA (COG1129), AraH (COG1172)

Seq: KQ235845.1 [Clostridium] bolteae WAL-14578 genomic scaffold supercont1.1, whole genome shotgun sequence (1727910 bp)
Overview 1 RT 1: 437858-441791 bp 2 RT 2: 684015-689395 bp Neighborhood of RT #1 [437858, 442246] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 FlgJ Neighborhood of RT #2 [684015, 689568] PerM DUF3837 RVT-GII GIIM RVT-GII TaR3-like_MBL-fold Feature: gene Location: 437858-438952 bp Ori: KMW15225.1 Feature: domain Description: PHA00653 Location: 437951-438950 bp Feature: domain Description: PHA00653 Location: 437951-438950 bp Feature: gene Location: 439012-439401 bp Ori: KMW15226.1 Feature: domain Description: Avd_like Location: 439072-439375 bp Feature: domain Description: Avd_like Location: 439072 -439375 bp Feature: gene Location: 439759-440799 bp Ori: KMW15227.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 439966-440641 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 439966-440641 bp Feature: gene Location: 440870-441298 bp Ori: KMW15228.1 Feature: domain Description: Phage_holin_4_1 Location: 440924-441251 bp Feature: domain Description: Phage_holin_4_1 Location: 44092 4-4412 51 bp Feature: gene Location: 441302-442246 bp Ori: KMW15229.1 Feature: domain Description: FlgJ Location: 441320-441791 bp Feature: domain Description: FlgJ Location: 44132 0-441791 bp Feature: gene Location: 684015-685262 bp Ori: KMW11005.1 Feature: domain Description: PerM Location: 684132-685164 bp Feature: domain Description: PerM Location: 684132 -685164 bp Feature: gene Location: 685466-685774 bp Ori: KMW11006.1 Feature: domain Description: DUF3837 Location: 685472-685769 bp Feature: domain Description: DUF3837 Location: 685472 -685769 bp Feature: gene Location: 685912-686598 bp Ori: KMW11007.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 685915-686149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 685915-686149 bp Feature: domain Description: GIIM Note: maturase Location: 686203-686431 bp Feature: domain Description: GIIM Note: maturase Location: 6862 03-686431 bp Feature: gene Location: 686707-687710 bp Ori: KMW09206.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 687022-687649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68702 2 -687649 bp Feature: gene Location: 688226-688552 bp Feature: gene Location: 688735-689568 bp Ori: KMW09208.1 Feature: domain Description: TaR3-like_MBL-fold Location: 688759-689395 bp Feature: domain Description: TaR3-like_MBL-fold Location: 688759-689395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105), FlgJ (COG1705), PerM (COG0628), DUF3837 (pfam12939), RVT-GII, GIIM (pfam08388), TaR3-like_MBL-fold (cd07715)

Seq: KQ235849.1 [Clostridium] bolteae WAL-14578 genomic scaffold supercont1.5, whole genome shotgun sequence (597001 bp)
Overview 1 RT 1: 549824-553320 bp Neighborhood of RT #1 [549824, 553349] RpoE HipB RVT-GII ZupT MdlB Feature: gene Location: 549824-550276 bp Ori: KMW12437.1 Feature: domain Description: RpoE Location: 549866-550265 bp Feature: domain Description: RpoE Location: 549866-550265 bp Feature: gene Location: 550714-551064 bp Ori: KMW12438.1 Feature: domain Description: HipB Location: 550750-550987 bp Feature: domain Description: HipB Location: 550750-550987 bp Feature: gene Location: 551439-551945 bp Ori: KMW12439.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551547-551886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551547-551886 bp Feature: gene Location: 552136-552903 bp Ori: KMW12440.1 Feature: domain Description: ZupT Location: 552154-552901 bp Feature: domain Description: ZupT Location: 552154-552901 bp Feature: gene Location: 553017-553349 bp Ori: KMW12441.1 Feature: domain Description: MdlB Location: 553149-553320 bp Feature: domain Description: MdlB Location: 553 149-553 3 20 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), HipB (COG1396), RVT-GII, ZupT (COG0428), MdlB (COG1132)

Seq: KQ235850.1 [Clostridium] bolteae WAL-14578 genomic scaffold supercont1.6, whole genome shotgun sequence (333146 bp)
Overview 1 RT 1: 107376-113249 bp 2 RT 2: 181120-191698 bp 3 RT 3: 235894-241870 bp Neighborhood of RT #1 [107376, 113308] RVT-GII GIIM Phage_int_SAM_3 INT_ICEBs1_C_like HTH_17 HTH_17 Neighborhood of RT #2 [181120, 191698] DUF3851 TraC-F-type RVT-GII HNHc PrgI IME4 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #3 [235894, 241884] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 T4SS-DNA_transf RVT-GII Intron_maturas2 HNHc DUF3801 Feature: gene Location: 107376-107741 bp Feature: gene Location: 107686-108774 bp Feature: gene Location: 109004-110284 bp Ori: KMW12086.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109214-109829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109214 -109829 bp Feature: domain Description: GIIM Note: maturase Location: 109892-110111 bp Feature: domain Description: GIIM Note: maturase Location: 109892-110111 bp Feature: gene Location: 111511-112893 bp Ori: KMW12087.1 Feature: domain Description: Phage_int_SAM_3 Location: 111691-111862 bp Feature: domain Description: Phage_int_SAM_3 Location: 111691-111862 bp Feature: domain Description: INT_ICEBs1_C_like Location: 112063-112693 bp Feature: domain Description: INT_ICEBs1_C_like Location: 112063-112693 bp Feature: gene Location: 112871-113308 bp Ori: KMW12088.1 Feature: domain Description: HTH_17 Location: 112901-113042 bp Feature: domain Description: HTH_17 Location: 112901-11304 2 bp Feature: domain Description: HTH_17 Location: 113105-113249 bp Feature: domain Description: HTH_17 Location: 113105-11324 9 bp Feature: gene Location: 181120-181494 bp Ori: KMW12157.1 Feature: domain Description: DUF3851 Location: 181123-181492 bp Feature: domain Description: DUF3851 Location: 181123-1814 92 bp Feature: gene Location: 181497-182864 bp Ori: KMW12158.1 Feature: domain Description: TraC-F-type Location: 181521-182664 bp Feature: domain Description: TraC-F-type Location: 181521-182664 bp Feature: gene Location: 183030-185003 bp Ori: KMW12159.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183366-184104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183366-184 104 bp Feature: domain Description: HNHc Note: nucleases Location: 184659-184797 bp Feature: domain Description: HNHc Note: nucleases Location: 184 659-184 797 bp Feature: gene Location: 185726-186700 bp Feature: gene Location: 186657-187112 bp Ori: KMW12161.1 Feature: domain Description: PrgI Location: 186672-186945 bp Feature: domain Description: PrgI Location: 186672-18694 5 bp Feature: gene Location: 187127-187672 bp Ori: KMW12162.1 Feature: domain Description: IME4 Location: 187136-187655 bp Feature: domain Description: IME4 Location: 187136-187655 bp Feature: gene Location: 187687-187902 bp Feature: gene Location: 188065-189897 bp Ori: KMW12164.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188329-189160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188329-189160 bp Feature: domain Description: Intron_maturas2 Location: 189232-189547 bp Feature: domain Description: Intron_maturas2 Location: 189232-18954 7 bp Feature: domain Description: HNHc Note: nucleases Location: 189694-189868 bp Feature: domain Description: HNHc Note: nucleases Location: 189694 -189868 bp Feature: gene Location: 190473-190931 bp Feature: gene Location: 191054-191698 bp Feature: gene Location: 235894-237774 bp Ori: KMW11892.1 Feature: domain Description: SR_TndX_transposase Location: 235918-236326 bp Feature: domain Description: SR_TndX_transposase Location: 235918-236326 bp Feature: domain Description: Recombinase Location: 236425-236788 bp Feature: domain Description: Recombinase Location: 2364 25-236788 bp Feature: domain Description: Zn_ribbon_recom Location: 236830-237013 bp Feature: domain Description: Zn_ribbon_recom Location: 236830-237013 bp Feature: domain Description: DUF4368 Location: 237298-237484 bp Feature: domain Description: DUF4 368 Location: 237298-2374 84 bp Feature: gene Location: 237847-238329 bp Ori: KMW11893.1 Feature: domain Description: T4SS-DNA_transf Location: 237934-238237 bp Feature: domain Description: T4 SS-DNA_transf Location: 237934 -238237 bp Feature: gene Location: 238504-240321 bp Ori: KMW11894.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238768-239587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238768-239587 bp Feature: domain Description: Intron_maturas2 Location: 239659-239962 bp Feature: domain Description: Intron_maturas2 Location: 239659-239962 bp Feature: domain Description: HNHc Note: nucleases Location: 240142-240286 bp Feature: domain Description: HNHc Note: nucleases Location: 24 014 2-24 0286 bp Feature: gene Location: 240881-241387 bp Feature: gene Location: 241384-241884 bp Ori: KMW11896.1 Feature: domain Description: DUF3801 Location: 241453-241870 bp Feature: domain Description: DUF3801 Location: 24 14 53-24 1870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), HTH_17 (pfam12728), DUF3851 (pfam12962), TraC-F-type (TIGR02746), HNHc (smart00507), PrgI (pfam12666), IME4 (COG4725)
Intron_maturas2 (pfam01348), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), T4SS-DNA_transf (pfam02534), DUF3801 (pfam12687)

Seq: KQ235853.1 [Clostridium] bolteae WAL-14578 genomic scaffold supercont1.9, whole genome shotgun sequence (275112 bp)
Overview 1 RT 1: 10804-15597 bp Neighborhood of RT #1 [10804, 15611] spoVFB NAT_SF YoaP RVT-Retrons UgpE UgpA Feature: gene Location: 10804-11388 bp Ori: KMW09817.1 Feature: domain Description: spoVFB Location: 10807-11377 bp Feature: domain Description: spoVFB Location: 10807-11377 bp Feature: gene Location: 11691-12434 bp Ori: KMW09818.1 Feature: domain Description: NAT_SF Location: 11898-12015 bp Feature: domain Description: NAT_SF Location: 11898-12015 bp Feature: domain Description: YoaP Location: 12297-12423 bp Feature: domain Description: YoaP Location: 12297-12423 bp Feature: gene Location: 12446-13453 bp Ori: KMW09819.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12611-13166 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12611-13166 bp Feature: gene Location: 13885-14718 bp Ori: KMW09820.1 Feature: domain Description: UgpE Location: 13900-14713 bp Feature: domain Description: UgpE Location: 13900-14713 bp Feature: gene Location: 14733-15611 bp Ori: KMW09821.1 Feature: domain Description: UgpA Location: 14751-15597 bp Feature: domain Description: UgpA Location: 1475 1-15 5 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spoVFB (PRK08305), NAT_SF (cl17182), YoaP (pfam14268), RVT-Retrons, UgpE (COG0395), UgpA (COG1175)