myRT

myRT report for GCA_001078435.1_Clos_citr_WAL_19142_V1

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Seq: KQ235889.1 [Clostridium] citroniae WAL-19142 genomic scaffold supercont1.15, whole genome shotgun sequence (78752 bp)
Overview 1 RT 1: 37979-43529 bp Neighborhood of RT #1 [37979, 43529] DDE_Tnp_1 RVT_N RVT-GII GIIM Feature: gene Location: 37979-38147 bp Feature: gene Location: 38398-38776 bp Feature: domain Description: DDE_Tnp_1 Location: 38407-38686 bp Feature: domain Description: DDE_Tnp_1 Location: 38407-38686 bp Feature: gene Location: 38854-40371 bp Feature: RT Description: RVT_N Location: 38908-39151 bp Feature: RT Description: RVT_N Location: 38908-391 51 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39208-39862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39208-39862 bp Feature: domain Description: GIIM Note: maturase Location: 39925-40159 bp Feature: domain Description: GIIM Note: maturase Location: 39925-401 59 bp Feature: gene Location: 40887-41464 bp Feature: gene Location: 43416-43529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: KQ235888.1 [Clostridium] citroniae WAL-19142 genomic scaffold supercont1.14, whole genome shotgun sequence (129228 bp)
Overview 1 RT 1: 62975-71495 bp Neighborhood of RT #1 [62975, 71495] Zn_Tnp_IS91 Y2_Tnp RVT-Retrons Trypsin_2 SIR2 Piwi_piwi-like_ProArk Feature: gene Location: 62975-63334 bp Feature: gene Location: 63586-64617 bp Feature: domain Description: Zn_Tnp_IS91 Location: 63589-63781 bp Feature: domain Description: Zn_Tnp_IS91 Location: 63589-63781 bp Feature: domain Description: Y2_Tnp Location: 63907-64411 bp Feature: domain Description: Y2 _Tnp Location: 63907-64411 bp Feature: gene Location: 64997-66661 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65147-65738 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65147-65738 bp Feature: domain Description: Trypsin_2 Location: 66155-66566 bp Feature: domain Description: Trypsin_2 Location: 66155-66566 bp Feature: gene Location: 66868-70008 bp Feature: domain Description: SIR2 Location: 66937-67435 bp Feature: domain Description: SIR2 Location: 66937-67435 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 68698-69955 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 68698-69955 bp Feature: gene Location: 70125-71495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), RVT-Retrons, Trypsin_2 (pfam13365), SIR2 (pfam02146), Piwi_piwi-like_ProArk (cd04659)

Seq: KQ235880.1 [Clostridium] citroniae WAL-19142 genomic scaffold supercont1.6, whole genome shotgun sequence (536355 bp)
Overview 1 RT 1: 449131-453268 bp Neighborhood of RT #1 [449131, 453414] Cons_hypoth95 AIM24 RVT-Retrons DltE AcrR Feature: gene Location: 449131-449688 bp Feature: domain Description: Cons_hypoth95 Location: 449134-449662 bp Feature: domain Description: Cons_hypoth95 Location: 44913 4-449662 bp Feature: gene Location: 449803-450480 bp Feature: domain Description: AIM24 Location: 449806-450469 bp Feature: domain Description: AIM24 Location: 449806-450469 bp Feature: gene Location: 450537-451532 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 450702-451257 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 450702-451257 bp Feature: gene Location: 451899-452702 bp Feature: domain Description: DltE Location: 451905-452667 bp Feature: domain Description: DltE Location: 451905-452667 bp Feature: gene Location: 452821-453414 bp Feature: domain Description: AcrR Location: 452842-453268 bp Feature: domain Description: AcrR Location: 452842-453 268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cons_hypoth95 (pfam03602), AIM24 (pfam01987), RVT-Retrons, DltE (COG3967), AcrR (COG1309)

Seq: KQ235875.1 [Clostridium] citroniae WAL-19142 genomic scaffold supercont1.1, whole genome shotgun sequence (897718 bp)
Overview 1 RT 1: 409817-416631 bp Neighborhood of RT #1 [409817, 417653] TcpE AAA_10 RVT-GII AAA_10 TrbL Feature: gene Location: 409817-410209 bp Feature: domain Description: TcpE Location: 409835-410132 bp Feature: domain Description: TcpE Location: 4 09835-4 10132 bp Feature: gene Location: 410193-411746 bp Feature: domain Description: AAA_10 Location: 411525-411705 bp Feature: domain Description: AAA_10 Location: 4 11525-4 11705 bp Feature: gene Location: 412443-414269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412743-413442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 1274 3-4 134 4 2 bp Feature: gene Location: 414487-415326 bp Feature: domain Description: AAA_10 Location: 414490-415288 bp Feature: domain Description: AAA_10 Location: 4 14 4 90-4 15288 bp Feature: gene Location: 415323-417653 bp Feature: domain Description: TrbL Location: 416274-416631 bp Feature: domain Description: TrbL Location: 4 16274 -4 16631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcpE (pfam12648), AAA_10 (pfam12846), RVT-GII, TrbL (pfam04610)

Seq: KQ235886.1 [Clostridium] citroniae WAL-19142 genomic scaffold supercont1.12, whole genome shotgun sequence (138688 bp)
Overview 1 RT 1: 26719-32607 bp Neighborhood of RT #1 [26719, 32759] CpaF RVT-GII HNHc CpaE-like Feature: gene Location: 26719-27648 bp Feature: gene Location: 27645-28742 bp Feature: domain Description: CpaF Location: 27711-28599 bp Feature: domain Description: CpaF Location: 27711-285 99 bp Feature: gene Location: 28791-30617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29106-29805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29106-29805 bp Feature: domain Description: HNHc Note: nucleases Location: 30354-30495 bp Feature: domain Description: HNHc Note: nucleases Location: 3035 4-30495 bp Feature: gene Location: 31351-31953 bp Feature: gene Location: 31947-32759 bp Feature: domain Description: CpaE-like Location: 32049-32607 bp Feature: domain Description: CpaE-like Location: 32049-32607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CpaF (COG4962), RVT-GII, HNHc (smart00507), CpaE-like (cd03111)