myRT

myRT report for GCA_001078445.1_Clos_clos_WAL_7855_v11

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Seq: KQ235930.1 [Clostridium] clostridioforme WAL-7855 genomic scaffold supercont1.18, whole genome shotgun sequence (65071 bp)
Overview 1 RT 1: 62509-64907 bp Neighborhood of RT #1 [62509, 65071] YitT_membrane SoxR RVT-GII GIIM Feature: gene Location: 62509-63198 bp Ori: KMW10903.1 Feature: domain Description: YitT_membrane Location: 62584-63136 bp Feature: domain Description: YitT_membrane Location: 62584-631 36 bp Feature: gene Location: 63226-64062 bp Ori: KMW10904.1 Feature: domain Description: SoxR Location: 63262-63556 bp Feature: domain Description: SoxR Location: 63262-63556 bp Feature: gene Location: 64397-65071 bp Ori: KMW10905.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64400-64616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64400-6461 6 bp Feature: domain Description: GIIM Note: maturase Location: 64679-64907 bp Feature: domain Description: GIIM Note: maturase Location: 64679-64907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YitT_membrane (pfam02588), SoxR (TIGR01950), RVT-GII, GIIM (pfam08388)

Seq: KQ235949.1 [Clostridium] clostridioforme WAL-7855 genomic scaffold supercont1.37, whole genome shotgun sequence (2771 bp)
Overview 1 RT 1: 1225-2763 bp Neighborhood of RT #1 [1225, 2771] INT_RitA_C_like recomb_XerD RVT-CRISPR-like Feature: gene Location: 1225-1764 bp Ori: KMW08363.1 Feature: domain Description: INT_RitA_C_like Location: 1240-1729 bp Feature: domain Description: INT_RitA_C_like Location: 12 40-172 9 bp Feature: gene Location: 1783-2457 bp Ori: KMW08364.1 Feature: domain Description: recomb_XerD Location: 2155-2449 bp Feature: domain Description: recomb_XerD Location: 2 155-2 449 bp Feature: gene Location: 2628-2771 bp Ori: KMW08365.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2634-2763 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2 634-2 763 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitA_C_like (cd01188), recomb_XerD (TIGR02225), RVT-CRISPR

Seq: KQ235937.1 [Clostridium] clostridioforme WAL-7855 genomic scaffold supercont1.25, whole genome shotgun sequence (44067 bp)
Overview 1 RT 1: 38186-44068 bp Neighborhood of RT #1 [38186, 44067] YicI YicI RVT-GII Feature: gene Location: 38186-40684 bp Ori: KMW09092.1 Feature: domain Description: YicI Location: 38366-40451 bp Feature: domain Description: YicI Location: 3 83 66-40451 bp Feature: gene Location: 40744-43254 bp Ori: KMW09093.1 Feature: domain Description: YicI Location: 40879-43054 bp Feature: domain Description: YicI Location: 40879-43 054 bp Feature: gene Location: 43846-44067 bp Ori: KMW09094.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43960-44068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 960-44068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YicI (COG1501), RVT-GII

Seq: KQ235948.1 [Clostridium] clostridioforme WAL-7855 genomic scaffold supercont1.36, whole genome shotgun sequence (2785 bp)
Overview 1 RT 1: 747-2517 bp Neighborhood of RT #1 [747, 2627] RVT-GII HNHc Feature: gene Location: 747-2627 bp Ori: KMW08366.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1080-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1080-1797 bp Feature: domain Description: HNHc Note: nucleases Location: 2379-2517 bp Feature: domain Description: HNHc Note: nucleases Location: 2379-2517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: KQ235941.1 [Clostridium] clostridioforme WAL-7855 genomic scaffold supercont1.29, whole genome shotgun sequence (25263 bp)
Overview 1 RT 1: 901-6411 bp Neighborhood of RT #1 [901, 7724] COG3943 RVT-Retrons Virulence_RhuM KAP_NTPase Feature: gene Location: 901-1923 bp Ori: KMW08864.1 Feature: domain Description: COG3943 Location: 919-1888 bp Feature: domain Description: COG3943 Location: 919-1888 bp Feature: gene Location: 2016-3995 bp Ori: KMW08865.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3153-3717 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 315 3-3717 bp Feature: gene Location: 4423-5031 bp Ori: KMW08866.1 Feature: domain Description: Virulence_RhuM Location: 4483-4963 bp Feature: domain Description: Virulence_RhuM Location: 4483-4963 bp Feature: gene Location: 5505-7724 bp Ori: KMW08867.1 Feature: domain Description: KAP_NTPase Location: 5559-6411 bp Feature: domain Description: KAP_NTPase Location: 5 5 5 9-6411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons, Virulence_RhuM (pfam13310), KAP_NTPase (pfam07693)

Seq: KQ235920.1 [Clostridium] clostridioforme WAL-7855 genomic scaffold supercont1.8, whole genome shotgun sequence (217907 bp)
Overview 1 RT 1: 755-3646 bp 2 RT 2: 120795-125757 bp Neighborhood of RT #1 [755, 3646] RVT-GII GIIM group_II_RT_mat Neighborhood of RT #2 [120795, 125780] YwqE SAPR RVT-GII SAPR CoxS Feature: gene Location: 755-1648 bp Ori: KMW17974.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761-1193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76 1-1193 bp Feature: domain Description: GIIM Note: maturase Location: 1256-1484 bp Feature: domain Description: GIIM Note: maturase Location: 1256 -1484 bp Feature: gene Location: 2938-3144 bp Ori: KMW17821.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 2974-3136 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2974-3136 bp Feature: gene Location: 3326-3646 bp Feature: gene Location: 120795-121556 bp Ori: KMW17315.1 Feature: domain Description: YwqE Location: 120810-121530 bp Feature: domain Description: YwqE Location: 120810-121530 bp Feature: gene Location: 121553-122011 bp Ori: KMW17316.1 Feature: domain Description: SAPR Location: 121565-121991 bp Feature: domain Description: SAPR Location: 12156 5-121991 bp Feature: gene Location: 123683-123914 bp Ori: KMW16853.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123773-123914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123773-123914 bp Feature: gene Location: 124500-124955 bp Ori: KMW16854.1 Feature: domain Description: SAPR Location: 124518-124863 bp Feature: domain Description: SAPR Location: 124518-12486 3 bp Feature: gene Location: 125295-125780 bp Ori: KMW16855.1 Feature: domain Description: CoxS Location: 125310-125757 bp Feature: domain Description: CoxS Location: 125310-125757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), YwqE (COG4464), SAPR (COG3947), CoxS (COG2080)

Seq: KQ235926.1 [Clostridium] clostridioforme WAL-7855 genomic scaffold supercont1.14, whole genome shotgun sequence (94376 bp)
Overview 1 RT 1: 73842-82582 bp Neighborhood of RT #1 [73842, 82596] HTH_21 PHA02517 RVT-GII GIIM RVT-GII BglG PTS_EIIA_2 thiolase Feature: gene Location: 73842-74234 bp Ori: KMW12238.1 Feature: domain Description: HTH_21 Location: 73968-74127 bp Feature: domain Description: HTH_21 Location: 7 3968-7 4127 bp Feature: gene Location: 74292-74627 bp Ori: KMW12239.1 Feature: domain Description: PHA02517 Location: 74307-74625 bp Feature: domain Description: PHA02517 Location: 7 4307 -7 4625 bp Feature: gene Location: 74795-75454 bp Ori: KMW12240.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74798-75005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 47 98-7 5005 bp Feature: domain Description: GIIM Note: maturase Location: 75059-75278 bp Feature: domain Description: GIIM Note: maturase Location: 7 5059-7 527 8 bp Feature: gene Location: 75625-75785 bp Feature: gene Location: 77260-78109 bp Feature: gene Location: 78525-78974 bp Ori: KMW12204.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78873-78972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 887 3-7 897 2 bp Feature: gene Location: 79412-81367 bp Ori: KMW12205.1 Feature: domain Description: BglG Location: 79415-80738 bp Feature: domain Description: BglG Location: 7 9415-807 38 bp Feature: domain Description: PTS_EIIA_2 Location: 80972-81353 bp Feature: domain Description: PTS_EIIA_2 Location: 8097 2-81353 bp Feature: gene Location: 81415-82596 bp Ori: KMW12206.1 Feature: domain Description: thiolase Location: 81430-82582 bp Feature: domain Description: thiolase Location: 81430-82582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), BglG (COG3711), PTS_EIIA_2 (pfam00359), thiolase (PRK06158)

Seq: KQ235939.1 [Clostridium] clostridioforme WAL-7855 genomic scaffold supercont1.27, whole genome shotgun sequence (42638 bp)
Overview 1 RT 1: 118-3731 bp Neighborhood of RT #1 [118, 3731] RVT-GII HNHc Feature: gene Location: 118-2004 bp Ori: KMW08974.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1159 bp Feature: domain Description: HNHc Note: nucleases Location: 1717-1885 bp Feature: domain Description: HNHc Note: nucleases Location: 1717-18 8 5 bp Feature: gene Location: 2802-2880 bp Feature: gene Location: 3315-3731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)