myRT

myRT report for GCA_001083805.1_ASM108380v1

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Seq: JXSK01000003.1 Photorhabdus luminescens subsp. luminescens strain DSM 3368 Contig003, whole genome shotgun sequence (628123 bp)
Overview 1 RT 1: 140854-146509 bp Neighborhood of RT #1 [140854, 146509] TIGR02646 COG3950 RVT-Retrons Feature: gene Location: 140854-141504 bp Feature: domain Description: TIGR02646 Location: 140917-141331 bp Feature: domain Description: TIGR02646 Location: 1 4091 7-1 41 331 bp Feature: gene Location: 141501-143159 bp Feature: domain Description: COG3950 Location: 141699-143100 bp Feature: domain Description: COG3950 Location: 1 41 699-1 431 00 bp Feature: gene Location: 143159-144091 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 143261-143861 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 43261 -1 43861 bp Feature: gene Location: 145009-145269 bp Feature: gene Location: 145478-146509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons

Seq: JXSK01000008.1 Photorhabdus luminescens subsp. luminescens strain DSM 3368 Contig006, whole genome shotgun sequence (362969 bp)
Overview 1 RT 1: 352212-356075 bp Neighborhood of RT #1 [352212, 356104] RVT-GII HTH_Tnp_1 TnpB_IS66 Feature: gene Location: 352212-352529 bp Feature: gene Location: 352735-353433 bp Feature: gene Location: 353552-355027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353957-354650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353957-354650 bp Feature: gene Location: 355473-355775 bp Feature: domain Description: HTH_Tnp_1 Location: 355482-355611 bp Feature: domain Description: HTH_Tnp_1 Location: 355482 -355611 bp Feature: gene Location: 355769-356104 bp Feature: domain Description: TnpB_IS66 Location: 355787-356075 bp Feature: domain Description: TnpB_IS66 Location: 355787-356075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_Tnp_1 (pfam01527), TnpB_IS66 (pfam05717)

Seq: JXSK01000007.1 Photorhabdus luminescens subsp. luminescens strain DSM 3368 Contig008, whole genome shotgun sequence (306351 bp)
Overview 1 RT 1: 64780-72030 bp Neighborhood of RT #1 [64780, 72089] N6_N4_Mtase DDE_Tnp_1_3 RVT-GII Intron_maturas2 HNHc PRK09010 DUF3577 Feature: gene Location: 64780-65706 bp Feature: domain Description: N6_N4_Mtase Location: 64933-65608 bp Feature: domain Description: N6_N4_Mtase Location: 6493 3 -65608 bp Feature: gene Location: 67471-68355 bp Feature: domain Description: DDE_Tnp_1_3 Location: 67783-68245 bp Feature: domain Description: DDE_Tnp_1_3 Location: 67783 -68245 bp Feature: gene Location: 68583-70469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68871-69708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68871-69708 bp Feature: domain Description: Intron_maturas2 Location: 69816-70215 bp Feature: domain Description: Intron_maturas2 Location: 69816-70215 bp Feature: domain Description: HNHc Note: nucleases Location: 70248-70419 bp Feature: domain Description: HNHc Note: nucleases Location: 70248-70419 bp Feature: gene Location: 71090-71554 bp Feature: domain Description: PRK09010 Location: 71093-71471 bp Feature: domain Description: PRK09010 Location: 71093 -71471 bp Feature: gene Location: 71628-72089 bp Feature: domain Description: DUF3577 Location: 71646-72030 bp Feature: domain Description: DUF3 577 Location: 71646-7203 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_N4_Mtase (pfam01555), DDE_Tnp_1_3 (pfam13612), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK09010 (single-stranded DNA-binding protein; Provisional), DUF3577 (pfam12101)

Seq: JXSK01000013.1 Photorhabdus luminescens subsp. luminescens strain DSM 3368 Contig013, whole genome shotgun sequence (105084 bp)
Overview 1 RT 1: 23179-32125 bp Neighborhood of RT #1 [23179, 32133] PRK09694 RVT-Retrons PRK12528 Feature: gene Location: 23179-25896 bp Feature: domain Description: PRK09694 Location: 23185-25537 bp Feature: domain Description: PRK09694 Location: 23185-25537 bp Feature: gene Location: 26546-26800 bp Feature: gene Location: 27403-28365 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27529-28096 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27529-28096 bp Feature: gene Location: 30094-31125 bp Feature: gene Location: 31630-32133 bp Feature: domain Description: PRK12528 Location: 31651-32125 bp Feature: domain Description: PRK12528 Location: 31651-32125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09694 (CRISPR-associated helicase/endonuclease Cas3), RVT-Retrons, PRK12528 (RNA polymerase sigma factor; Provisional)