myRT

myRT report for GCA_001084885.1_8016_2_75

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Seq: CQCV01000034.1 Yersinia enterocolitica genome assembly 8016_2#75, scaffold ERS137951SCcontig000034, whole genome shotgun sequence (33353 bp)
Overview 1 RT 1: 8556-13566 bp Neighborhood of RT #1 [8556, 13583] PRK09678 RVT-Retrons PRK09692 AlpA Feature: gene Location: 8556-8801 bp Ori: CNK35833.1 Feature: domain Description: PRK09678 Location: 8559-8715 bp Feature: domain Description: PRK09678 Location: 8559-871 5 bp Feature: gene Location: 9130-9882 bp Feature: gene Location: 9900-11123 bp Ori: CNK35879.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10050-10668 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 0050-1 0668 bp Feature: gene Location: 11453-12649 bp Ori: CNK35904.1 Gene: intA1 Feature: domain Description: PRK09692 Location: 11456-12629 bp Feature: domain Description: PRK09692 Location: 1 1 456-1 2629 bp Feature: gene Location: 13380-13583 bp Ori: CNK35934.1 Feature: domain Description: AlpA Location: 13389-13566 bp Feature: domain Description: AlpA Location: 1 3389-1 3566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, PRK09692 (Integrase; provisional), AlpA (COG3311)

Seq: CQCV01000017.1 Yersinia enterocolitica genome assembly 8016_2#75, scaffold ERS137951SCcontig000017, whole genome shotgun sequence (99550 bp)
Overview 1 RT 1: 72545-77819 bp Neighborhood of RT #1 [72545, 78007] FocA PRK09692 RVT-UG17 SLATT_5 Ogr_Delta Feature: gene Location: 72545-73456 bp Ori: CNK08019.1 Gene: yfdC Feature: domain Description: FocA Location: 72635-73403 bp Feature: domain Description: FocA Location: 72 635-73403 bp Feature: gene Location: 73866-75047 bp Ori: CNK08047.1 Gene: intS_3 Feature: domain Description: PRK09692 Location: 73875-75024 bp Feature: domain Description: PRK09692 Location: 73875-7502 4 bp Feature: gene Location: 75044-76378 bp Ori: CNK08074.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 75272-75875 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 752 72 -75875 bp Feature: gene Location: 76356-76940 bp Ori: CNK08101.1 Feature: domain Description: SLATT_5 Location: 76371-76902 bp Feature: domain Description: SLATT_5 Location: 76371-76902 bp Feature: gene Location: 77660-78007 bp Ori: CNK08127.1 Feature: domain Description: Ogr_Delta Location: 77684-77819 bp Feature: domain Description: Ogr_Delta Location: 77684-77819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FocA (COG2116), PRK09692 (Integrase; provisional), RVT-UG17, SLATT_5 (pfam18160), Ogr_Delta (pfam04606)