myRT

myRT report for GCA_001086725.1_ASM108672v1

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Seq: LFMV01000012.1 Pseudomonas aeruginosa strain BTP038 MC15175182, whole genome shotgun sequence (3162907 bp)
Overview 1 RT 1: 391070-401378 bp 2 RT 2: 417636-426485 bp Neighborhood of RT #1 [391070, 401380] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [417636, 426514] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 391070-392191 bp Feature: domain Description: COG3177 Location: 391088-392180 bp Feature: domain Description: COG31 77 Location: 391 088-3921 80 bp Feature: gene Location: 392453-392614 bp Feature: gene Location: 392917-394602 bp Feature: RT Description: RVT_N Location: 392974-393214 bp Feature: RT Description: RVT_N Location: 392974-39321 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393262-393898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393262-393898 bp Feature: domain Description: GIIM Note: maturase Location: 393952-394183 bp Feature: domain Description: GIIM Note: maturase Location: 393952-3941 83 bp Feature: domain Description: HNH Note: nucleases Location: 394435-394573 bp Feature: domain Description: HNH Note: nucleases Location: 394435-394573 bp Feature: gene Location: 395683-399420 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 395791-396448 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 395791 -396448 bp Feature: domain Description: PRK09776 Location: 396661-397132 bp Feature: domain Description: PRK09776 Location: 396661 -3971 32 bp Feature: domain Description: PAS Location: 397183-397714 bp Feature: domain Description: PAS Location: 3971 83-39771 4 bp Feature: domain Description: PRK10060 Location: 397723-399370 bp Feature: domain Description: PRK1 0060 Location: 397723-399370 bp Feature: gene Location: 399527-401380 bp Feature: domain Description: PRK05658 Location: 399539-401378 bp Feature: domain Description: PRK05658 Location: 399539-401 378 bp Feature: gene Location: 417636-418850 bp Feature: domain Description: PRK10770 Location: 417648-418842 bp Feature: domain Description: PRK1 0770 Location: 41 7648-41 8842 bp Feature: gene Location: 418909-421710 bp Feature: domain Description: LptD Location: 419104-421696 bp Feature: domain Description: LptD Location: 41 91 04-421 696 bp Feature: gene Location: 421843-423555 bp Feature: RT Description: RVT_N Location: 421900-422143 bp Feature: RT Description: RVT_N Location: 421 900-4221 43 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422188-422824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4221 88-422824 bp Feature: domain Description: YkfC Location: 423034-423184 bp Feature: domain Description: YkfC Location: 423034-4231 84 bp Feature: domain Description: HNH Note: nucleases Location: 423361-423499 bp Feature: domain Description: HNH Note: nucleases Location: 423361 -423499 bp Feature: gene Location: 424827-425843 bp Feature: domain Description: COG3178 Location: 424830-425829 bp Feature: domain Description: COG31 78 Location: 424830-425829 bp Feature: gene Location: 425840-426514 bp Feature: domain Description: NTP_transferase_like_1 Location: 425846-426485 bp Feature: domain Description: NTP_transferase_like_1 Location: 425846-426485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)