myRT

myRT report for GCA_001087325.1_5737_2_8

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Seq: CMTJ01000001.1 Streptococcus pneumoniae genome assembly 5737_2#8, scaffold ERS096101SCcontig000001, whole genome shotgun sequence (154910 bp)
Overview 1 RT 1: 21687-30944 bp 2 RT 2: 46686-52560 bp Neighborhood of RT #1 [21687, 31126] COG5340 AbiEii RVT-GII KOG4768 cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Neighborhood of RT #2 [46686, 52565] MFS_MefA_like GIIM GIIM RVT-GII RVT-GII GlpF Feature: gene Location: 21687-22277 bp Feature: domain Description: COG5340 Location: 21690-22122 bp Feature: domain Description: COG5340 Location: 21 690-221 22 bp Feature: gene Location: 22274-23119 bp Feature: domain Description: AbiEii Location: 22373-23072 bp Feature: domain Description: AbiEii Location: 22373-23072 bp Feature: gene Location: 23469-25391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23796-24531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23796-24531 bp Feature: domain Description: KOG4768 Location: 24678-24783 bp Feature: domain Description: KOG4768 Location: 24678-24783 bp Feature: domain Description: cas_Csn1 Location: 24942-25221 bp Feature: domain Description: cas_Csn1 Location: 24942-25221 bp Feature: gene Location: 26100-28778 bp Feature: domain Description: Peptidase_M23 Location: 27546-27750 bp Feature: domain Description: Peptidase_M23 Location: 27546-27750 bp Feature: domain Description: Phage_lysozyme2 Location: 27903-28413 bp Feature: domain Description: Phage_lysozyme2 Location: 27903-2841 3 bp Feature: domain Description: COG3942 Location: 28488-28761 bp Feature: domain Description: COG3942 Location: 28488-28761 bp Feature: gene Location: 28775-31126 bp Feature: domain Description: TraC-F-type Location: 29561-30944 bp Feature: domain Description: TraC-F-type Location: 29561 -30944 bp Feature: gene Location: 46686-47864 bp Feature: domain Description: MFS_MefA_like Location: 46701-47844 bp Feature: domain Description: MFS_MefA_like Location: 46701 -47844 bp Feature: gene Location: 48320-48601 bp Feature: domain Description: GIIM Note: maturase Location: 48326-48410 bp Feature: domain Description: GIIM Note: maturase Location: 48326-4841 0 bp Feature: domain Description: GIIM Note: maturase Location: 48452-48515 bp Feature: domain Description: GIIM Note: maturase Location: 48452-4851 5 bp Feature: gene Location: 48729-49178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48744-49107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48744-491 07 bp Feature: gene Location: 49163-49576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49367-49574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49367-49574 bp Feature: gene Location: 50688-51275 bp Feature: gene Location: 51861-52565 bp Feature: domain Description: GlpF Location: 51864-52560 bp Feature: domain Description: GlpF Location: 51 864-52560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746), MFS_MefA_like (cd06173)
GIIM (pfam08388), GlpF (COG0580)