myRT

myRT report for GCA_001089265.1_5242_3_12

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Seq: CPPY01000003.1 Streptococcus pneumoniae genome assembly 5242_3#12, scaffold ERS011511SCcontig000003, whole genome shotgun sequence (61226 bp)
Overview 1 RT 1: 38226-47510 bp Neighborhood of RT #1 [38226, 47665] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII cas_Csn1 AbiEii COG5340 Feature: gene Location: 38226-40577 bp Feature: domain Description: TraC-F-type Location: 39012-40395 bp Feature: domain Description: TraC-F-type Location: 3901 2-40395 bp Feature: gene Location: 40574-43252 bp Feature: domain Description: Peptidase_M23 Location: 42020-42224 bp Feature: domain Description: Peptidase_M23 Location: 42020-42224 bp Feature: domain Description: Phage_lysozyme2 Location: 42377-42887 bp Feature: domain Description: Phage_lysozyme2 Location: 42377-42887 bp Feature: domain Description: COG3942 Location: 42965-43235 bp Feature: domain Description: COG3942 Location: 42965-43235 bp Feature: gene Location: 43961-45883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44288-45023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44288-45023 bp Feature: domain Description: cas_Csn1 Location: 45434-45713 bp Feature: domain Description: cas_Csn1 Location: 45434-4571 3 bp Feature: gene Location: 46233-47078 bp Feature: domain Description: AbiEii Location: 46332-47031 bp Feature: domain Description: AbiEii Location: 46332-47031 bp Feature: gene Location: 47075-47665 bp Feature: domain Description: COG5340 Location: 47078-47510 bp Feature: domain Description: COG5340 Location: 47078-4751 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, cas_Csn1 (TIGR01865), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system )