myRT

myRT report for GCA_001091225.1_8016_2_89

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Seq: CQEJ01000007.1 Yersinia aldovae genome assembly 8016_2#89, scaffold ERS137965SCcontig000007, whole genome shotgun sequence (183392 bp)
Overview 1 RT 1: 176092-178601 bp Neighborhood of RT #1 [176092, 178601] W phage_P2_V RVT-Retrons HTH_XRE Feature: gene Location: 176092-176442 bp Ori: CNK98002.1 Feature: domain Description: W Location: 176119-176425 bp Feature: domain Description: W Location: 1 761 1 9-1 76425 bp Feature: gene Location: 176439-177080 bp Ori: CNK98037.1 Feature: domain Description: phage_P2_V Location: 176475-177069 bp Feature: domain Description: phage_P2_V Location: 1 76475-1 77069 bp Feature: gene Location: 177181-178113 bp Ori: CNK98049.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 177358-177895 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 77358-1 77895 bp Feature: gene Location: 178088-178405 bp Ori: CNK98067.1 Feature: domain Description: HTH_XRE Location: 178103-178265 bp Feature: domain Description: HTH_XRE Location: 1 781 03-1 78265 bp Feature: gene Location: 178437-178601 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT W (PHA02516), phage_P2_V (TIGR01644), RVT-Retrons, HTH_XRE (smart00530)

Seq: CQEJ01000039.1 Yersinia aldovae genome assembly 8016_2#89, scaffold ERS137965SCcontig000039, whole genome shotgun sequence (5667 bp)
Overview 1 RT 1: 3390-5137 bp Neighborhood of RT #1 [3390, 5358] Doc Gp138_N RVT-GII GIIM Feature: gene Location: 3390-3764 bp Ori: CNL79909.1 Feature: domain Description: Doc Location: 3393-3756 bp Feature: domain Description: Doc Location: 3393-3756 bp Feature: gene Location: 3827-4501 bp Ori: CNL79937.1 Feature: domain Description: Gp138_N Location: 3920-4223 bp Feature: domain Description: Gp138_N Location: 392 0-42 2 3 bp Feature: gene Location: 4525-5358 bp Ori: CNL79959.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4531-4840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4531-4840 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Doc (COG3654), Gp138_N (pfam18352), RVT-GII, GIIM (pfam08388)