myRT

myRT report for GCA_001092165.2_7001_2_4

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Seq: CNWW02000169.1 Streptococcus pneumoniae genome assembly 7001_2#4, scaffold R34-3108_contig_95, whole genome shotgun sequence (62958 bp)
Overview 1 RT 1: 13654-22911 bp 2 RT 2: 36637-43548 bp Neighborhood of RT #1 [13654, 23093] COG5340 AbiEii RVT-GII cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Neighborhood of RT #2 [36637, 43548] PRK04813 MFS_MefA_like RVT-GII GIIM RVT-GII Feature: gene Location: 13654-14244 bp Feature: domain Description: COG5340 Location: 13657-14089 bp Feature: domain Description: COG5340 Location: 1 3657-1 4089 bp Feature: gene Location: 14241-15086 bp Feature: domain Description: AbiEii Location: 14340-15039 bp Feature: domain Description: AbiEii Location: 1 4340-1 5039 bp Feature: gene Location: 15436-17358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15763-16498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5763-1 6498 bp Feature: domain Description: cas_Csn1 Location: 16909-17188 bp Feature: domain Description: cas_Csn1 Location: 1 6909-1 71 88 bp Feature: gene Location: 18067-20745 bp Feature: domain Description: Peptidase_M23 Location: 19513-19717 bp Feature: domain Description: Peptidase_M23 Location: 1 951 3-1 971 7 bp Feature: domain Description: Phage_lysozyme2 Location: 19870-20377 bp Feature: domain Description: Phage_lysozyme2 Location: 1 9870-20377 bp Feature: domain Description: COG3942 Location: 20497-20728 bp Feature: domain Description: COG3942 Location: 20497-20728 bp Feature: gene Location: 20742-23093 bp Feature: domain Description: TraC-F-type Location: 21528-22911 bp Feature: domain Description: TraC-F-type Location: 21 528-2291 1 bp Feature: gene Location: 36637-38187 bp Feature: domain Description: PRK04813 Location: 36655-38182 bp Feature: domain Description: PRK0481 3 Location: 36655-381 82 bp Feature: gene Location: 38653-39831 bp Feature: domain Description: MFS_MefA_like Location: 38668-39811 bp Feature: domain Description: MFS_MefA_like Location: 38668-3981 1 bp Feature: gene Location: 40286-40846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40295-40388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40295-40388 bp Feature: domain Description: GIIM Note: maturase Location: 40442-40655 bp Feature: domain Description: GIIM Note: maturase Location: 40442-40655 bp Feature: gene Location: 40846-41562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41050-41542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 050-41 542 bp Feature: gene Location: 42671-43258 bp Feature: gene Location: 43345-43548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746), PRK04813 (D-alanine--poly(phosphoribitol) ligase subunit DltA), MFS_MefA_like (cd06173)
GIIM (pfam08388)