myRT

myRT report for GCA_001095345.1_5756_5_11

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Seq: CMVC01000019.1 Streptococcus pneumoniae genome assembly 5756_5#11, scaffold ERS096056SCcontig000019, whole genome shotgun sequence (38775 bp)
Overview 1 RT 1: 8369-17653 bp Neighborhood of RT #1 [8369, 17808] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII cas_Csn1 AbiEii COG5340 Feature: gene Location: 8369-10720 bp Feature: domain Description: TraC-F-type Location: 9155-10538 bp Feature: domain Description: TraC-F-type Location: 91 55-1 0538 bp Feature: gene Location: 10717-13395 bp Feature: domain Description: Peptidase_M23 Location: 12163-12367 bp Feature: domain Description: Peptidase_M23 Location: 1 21 63-1 2367 bp Feature: domain Description: Phage_lysozyme2 Location: 12520-13030 bp Feature: domain Description: Phage_lysozyme2 Location: 1 2520-1 3030 bp Feature: domain Description: COG3942 Location: 13108-13378 bp Feature: domain Description: COG3942 Location: 1 31 08-1 3378 bp Feature: gene Location: 14104-16026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14431-15166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4431 -1 51 66 bp Feature: domain Description: cas_Csn1 Location: 15577-15856 bp Feature: domain Description: cas_Csn1 Location: 1 5577-1 5856 bp Feature: gene Location: 16376-17221 bp Feature: domain Description: AbiEii Location: 16475-17174 bp Feature: domain Description: AbiEii Location: 1 6475-1 71 74 bp Feature: gene Location: 17218-17808 bp Feature: domain Description: COG5340 Location: 17221-17653 bp Feature: domain Description: COG5340 Location: 1 7221 -1 7653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, cas_Csn1 (TIGR01865), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system ), TraC-F-type (TIGR02746)

Seq: CMVC01000003.1 Streptococcus pneumoniae genome assembly 5756_5#11, scaffold ERS096056SCcontig000003, whole genome shotgun sequence (62670 bp)
Overview 1 RT 1: 21256-28615 bp Neighborhood of RT #1 [21256, 28632] EriC TrkA_C xerS RVT-GII GIIM Lip_prot_lig_C AceF lipoamide_DH Feature: gene Location: 21256-22806 bp Feature: domain Description: EriC Location: 21349-22561 bp Feature: domain Description: EriC Location: 2 1349-2 2 561 bp Feature: domain Description: TrkA_C Location: 22606-22801 bp Feature: domain Description: TrkA_C Location: 2 2 606-2 2 801 bp Feature: gene Location: 23390-24460 bp Feature: domain Description: xerS Location: 23393-24458 bp Feature: domain Description: xerS Location: 2 3393-2 4458 bp Feature: gene Location: 25162-26340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25366-25981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5366-2 5981 bp Feature: domain Description: GIIM Note: maturase Location: 26035-26248 bp Feature: domain Description: GIIM Note: maturase Location: 2 6035-2 62 48 bp Feature: gene Location: 26505-26858 bp Feature: domain Description: Lip_prot_lig_C Location: 26598-26844 bp Feature: domain Description: Lip_prot_lig_C Location: 2 6598-2 6844 bp Feature: gene Location: 26929-28632 bp Feature: domain Description: AceF Location: 26932-27229 bp Feature: domain Description: AceF Location: 2 6932 -2 72 2 9 bp Feature: domain Description: lipoamide_DH Location: 27265-28615 bp Feature: domain Description: lipoamide_DH Location: 2 72 65-2 8615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EriC (cd01031), TrkA_C (pfam02080), xerS (PRK05084), RVT-GII, GIIM (pfam08388), Lip_prot_lig_C (pfam10437), AceF (COG0508), lipoamide_DH (TIGR01350)