myRT

myRT report for GCA_001097525.1_10562_2_1

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Seq: CJGI01000001.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10562_2#1, scaffold ERS326210SCcontig000001, whole genome shotgun sequence (468800 bp)
Overview 1 RT 1: 3447-9662 bp Neighborhood of RT #1 [3447, 9691] Mrr_cat Inovirus_Gp2 RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 3447-4307 bp Ori: CHI97120.1 Feature: domain Description: Mrr_cat Location: 3882-4191 bp Feature: domain Description: Mrr_cat Location: 3882-41 91 bp Feature: gene Location: 4635-5366 bp Ori: CHI97153.1 Feature: domain Description: Inovirus_Gp2 Location: 4680-5334 bp Feature: domain Description: Inovirus_Gp2 Location: 4680-5334 bp Feature: gene Location: 6191-7423 bp Ori: CHI97184.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6392-7046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6392-7046 bp Feature: domain Description: GIIM Note: maturase Location: 7124-7346 bp Feature: domain Description: GIIM Note: maturase Location: 71 24-7346 bp Feature: gene Location: 7885-9324 bp Ori: CHI97216.1 Feature: domain Description: LZ_Tnp_IS66 Location: 8023-8248 bp Feature: domain Description: LZ_Tnp_IS66 Location: 8023-8248 bp Feature: domain Description: zf-IS66 Location: 8269-8401 bp Feature: domain Description: zf-IS66 Location: 8269-8401 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8446-9283 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8446-9283 bp Feature: gene Location: 9344-9691 bp Ori: CHI97234.1 Feature: domain Description: TnpB_IS66 Location: 9371-9662 bp Feature: domain Description: TnpB_IS66 Location: 9371 -9662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), Inovirus_Gp2 (pfam11726), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: CJGI01000002.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10562_2#1, scaffold ERS326210SCcontig000002, whole genome shotgun sequence (444986 bp)
Overview 1 RT 1: 252752-257994 bp Neighborhood of RT #1 [252752, 258041] PRK09678 RVT-UG11 type_I_hlyD type_I_hlyD type_I_sec_LssB Feature: gene Location: 252752-252970 bp Ori: CHJ22580.1 Gene: ogr Feature: domain Description: PRK09678 Location: 252755-252953 bp Feature: domain Description: PRK09678 Location: 2 52 755-2 52 953 bp Feature: gene Location: 253232-253405 bp Feature: gene Location: 253374-254147 bp Ori: CHJ22650.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 253509-253962 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 53509-2 53962 bp Feature: gene Location: 254690-255880 bp Ori: CHJ22691.1 Gene: prsE_1 Feature: domain Description: type_I_hlyD Location: 254771-255215 bp Feature: domain Description: type_I_hlyD Location: 2 54771-2 552 15 bp Feature: domain Description: type_I_hlyD Location: 255254-255878 bp Feature: domain Description: type_I_hlyD Location: 2 552 54-2 55878 bp Feature: gene Location: 255861-258041 bp Ori: CHJ22730.1 Gene: apxIB_1 Feature: domain Description: type_I_sec_LssB Location: 255921-257994 bp Feature: domain Description: type_I_sec_LssB Location: 2 5592 1-2 57994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, type_I_hlyD (TIGR01843), type_I_sec_LssB (TIGR03375)