myRT

myRT report for GCA_001098245.1_5737_5_3

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Seq: CMTZ01000024.1 Streptococcus pneumoniae genome assembly 5737_5#3, scaffold ERS096120SCcontig000024, whole genome shotgun sequence (36570 bp)
Overview 1 RT 1: 13526-22783 bp Neighborhood of RT #1 [13526, 22965] COG5340 AbiEii RVT-GII cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Feature: gene Location: 13526-14116 bp Feature: domain Description: COG5340 Location: 13529-13961 bp Feature: domain Description: COG5340 Location: 1 3529-1 3961 bp Feature: gene Location: 14113-14958 bp Feature: domain Description: AbiEii Location: 14212-14911 bp Feature: domain Description: AbiEii Location: 1 421 2-1 491 1 bp Feature: gene Location: 15308-17230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15635-16370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5635-1 6370 bp Feature: domain Description: cas_Csn1 Location: 16781-17060 bp Feature: domain Description: cas_Csn1 Location: 1 6781 -1 7060 bp Feature: gene Location: 17939-20617 bp Feature: domain Description: Peptidase_M23 Location: 19385-19589 bp Feature: domain Description: Peptidase_M23 Location: 1 9385-1 9589 bp Feature: domain Description: Phage_lysozyme2 Location: 19742-20252 bp Feature: domain Description: Phage_lysozyme2 Location: 1 9742-20252 bp Feature: domain Description: COG3942 Location: 20330-20600 bp Feature: domain Description: COG3942 Location: 20330-20600 bp Feature: gene Location: 20614-22965 bp Feature: domain Description: TraC-F-type Location: 21400-22783 bp Feature: domain Description: TraC-F-type Location: 21 400-22783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746)

Seq: CMTZ01000029.1 Streptococcus pneumoniae genome assembly 5737_5#3, scaffold ERS096120SCcontig000029, whole genome shotgun sequence (32111 bp)
Overview 1 RT 1: 21272-28631 bp Neighborhood of RT #1 [21272, 28648] EriC TrkA_C xerS RVT-GII GIIM Lip_prot_lig_C AceF lipoamide_DH Feature: gene Location: 21272-22822 bp Feature: domain Description: EriC Location: 21365-22577 bp Feature: domain Description: EriC Location: 2 1365-2 2 577 bp Feature: domain Description: TrkA_C Location: 22622-22817 bp Feature: domain Description: TrkA_C Location: 2 2 62 2 -2 2 817 bp Feature: gene Location: 23406-24476 bp Feature: domain Description: xerS Location: 23409-24474 bp Feature: domain Description: xerS Location: 2 3409-2 4474 bp Feature: gene Location: 25178-26356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25382-25997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5382 -2 5997 bp Feature: domain Description: GIIM Note: maturase Location: 26051-26264 bp Feature: domain Description: GIIM Note: maturase Location: 2 6051-2 62 64 bp Feature: gene Location: 26521-26874 bp Feature: domain Description: Lip_prot_lig_C Location: 26614-26860 bp Feature: domain Description: Lip_prot_lig_C Location: 2 6614-2 6860 bp Feature: gene Location: 26945-28648 bp Feature: domain Description: AceF Location: 26948-27245 bp Feature: domain Description: AceF Location: 2 6948-2 72 45 bp Feature: domain Description: lipoamide_DH Location: 27281-28631 bp Feature: domain Description: lipoamide_DH Location: 2 72 81-2 8631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EriC (cd01031), TrkA_C (pfam02080), xerS (PRK05084), RVT-GII, GIIM (pfam08388), Lip_prot_lig_C (pfam10437), AceF (COG0508), lipoamide_DH (TIGR01350)