myRT

myRT report for GCA_001098645.1_10493_1_3

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Seq: CJBN01000032.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10493_1#3, scaffold ERS326213SCcontig000032, whole genome shotgun sequence (43432 bp)
Overview 1 RT 1: 38252-43061 bp Neighborhood of RT #1 [38252, 43061] type_I_sec_LssB type_I_hlyD type_I_hlyD RVT-UG11 Feature: gene Location: 38252-40432 bp Ori: CHD44028.1 Gene: apxIB_2 Feature: domain Description: type_I_sec_LssB Location: 38312-40385 bp Feature: domain Description: type_I_sec_LssB Location: 3831 2-40385 bp Feature: gene Location: 40413-41603 bp Ori: CHD44069.1 Gene: prsE_2 Feature: domain Description: type_I_hlyD Location: 40494-40938 bp Feature: domain Description: type_I_hlyD Location: 40494-40938 bp Feature: domain Description: type_I_hlyD Location: 40977-41601 bp Feature: domain Description: type_I_hlyD Location: 40977-41 601 bp Feature: gene Location: 42146-42919 bp Ori: CHD44120.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 42281-42734 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 42281 -42734 bp Feature: gene Location: 42888-43061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_sec_LssB (TIGR03375), type_I_hlyD (TIGR01843), RVT-UG11

Seq: CJBN01000003.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10493_1#3, scaffold ERS326213SCcontig000003, whole genome shotgun sequence (261247 bp)
Overview 1 RT 1: 251534-257662 bp Neighborhood of RT #1 [251534, 257778] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM Inovirus_Gp2 Mrr_cat Feature: gene Location: 251534-251881 bp Ori: CHC08464.1 Feature: domain Description: TnpB_IS66 Location: 251561-251852 bp Feature: domain Description: TnpB_IS66 Location: 2 51561-2 51852 bp Feature: gene Location: 251901-253340 bp Ori: CHC08499.1 Feature: domain Description: LZ_Tnp_IS66 Location: 252039-252264 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 52 039-2 52 2 64 bp Feature: domain Description: zf-IS66 Location: 252285-252417 bp Feature: domain Description: zf-IS66 Location: 2 52 2 85-2 52 417 bp Feature: domain Description: DDE_Tnp_IS66 Location: 252462-253299 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 52 462 -2 532 99 bp Feature: gene Location: 253802-255034 bp Ori: CHC08533.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254003-254657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 54003-2 54657 bp Feature: domain Description: GIIM Note: maturase Location: 254735-254957 bp Feature: domain Description: GIIM Note: maturase Location: 2 54735-2 54957 bp Feature: gene Location: 255859-256590 bp Ori: CHC08575.1 Feature: domain Description: Inovirus_Gp2 Location: 255904-256558 bp Feature: domain Description: Inovirus_Gp2 Location: 2 55904-2 56558 bp Feature: gene Location: 256918-257778 bp Ori: CHC08609.1 Feature: domain Description: Mrr_cat Location: 257353-257662 bp Feature: domain Description: Mrr_cat Location: 2 57353-2 57662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), Inovirus_Gp2 (pfam11726), Mrr_cat (pfam04471)