myRT

myRT report for GCA_001107665.1_10493_1_15

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Seq: CJBI01000036.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10493_1#15, scaffold ERS326243SCcontig000036, whole genome shotgun sequence (43350 bp)
Overview 1 RT 1: 38174-42983 bp Neighborhood of RT #1 [38174, 42983] type_I_sec_LssB type_I_hlyD type_I_hlyD RVT-UG11 Feature: gene Location: 38174-40354 bp Ori: CHD07671.1 Gene: apxIB_2 Feature: domain Description: type_I_sec_LssB Location: 38234-40307 bp Feature: domain Description: type_I_sec_LssB Location: 38234-40307 bp Feature: gene Location: 40335-41525 bp Ori: CHD07708.1 Gene: prsE_2 Feature: domain Description: type_I_hlyD Location: 40416-40860 bp Feature: domain Description: type_I_hlyD Location: 4041 6-40860 bp Feature: domain Description: type_I_hlyD Location: 40899-41523 bp Feature: domain Description: type_I_hlyD Location: 40899-41 523 bp Feature: gene Location: 42068-42841 bp Ori: CHD07752.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 42203-42656 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 42203-42656 bp Feature: gene Location: 42810-42983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_sec_LssB (TIGR03375), type_I_hlyD (TIGR01843), RVT-UG11

Seq: CJBI01000002.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10493_1#15, scaffold ERS326243SCcontig000002, whole genome shotgun sequence (261507 bp)
Overview 1 RT 1: 3467-9682 bp Neighborhood of RT #1 [3467, 9711] Mrr_cat Inovirus_Gp2 RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 3467-4327 bp Ori: CHB43950.1 Feature: domain Description: Mrr_cat Location: 3902-4211 bp Feature: domain Description: Mrr_cat Location: 3902 -42 11 bp Feature: gene Location: 4655-5386 bp Ori: CHB43985.1 Feature: domain Description: Inovirus_Gp2 Location: 4700-5354 bp Feature: domain Description: Inovirus_Gp2 Location: 4700-5354 bp Feature: gene Location: 6211-7443 bp Ori: CHB44022.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6412-7066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6412 -7066 bp Feature: domain Description: GIIM Note: maturase Location: 7144-7366 bp Feature: domain Description: GIIM Note: maturase Location: 7144-7366 bp Feature: gene Location: 7905-9344 bp Ori: CHB44072.1 Feature: domain Description: LZ_Tnp_IS66 Location: 8043-8268 bp Feature: domain Description: LZ_Tnp_IS66 Location: 8043-82 68 bp Feature: domain Description: zf-IS66 Location: 8289-8421 bp Feature: domain Description: zf-IS66 Location: 82 89-842 1 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8466-9303 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8466-9303 bp Feature: gene Location: 9364-9711 bp Ori: CHB44086.1 Feature: domain Description: TnpB_IS66 Location: 9391-9682 bp Feature: domain Description: TnpB_IS66 Location: 9391-9682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), Inovirus_Gp2 (pfam11726), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)