myRT

myRT report for GCA_001109945.1_5737_3_11

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Seq: CMTP01000014.1 Streptococcus pneumoniae genome assembly 5737_3#11, scaffold ERS096116SCcontig000014, whole genome shotgun sequence (45035 bp)
Overview 1 RT 1: 13554-22079 bp Neighborhood of RT #1 [13554, 22252] COG5340 AbiEii RVT-GII cas_Csn1 Phage_lysozyme2 PRK08581 TraC-F-type Feature: gene Location: 13554-14144 bp Feature: domain Description: COG5340 Location: 13557-13989 bp Feature: domain Description: COG5340 Location: 1 3557-1 3989 bp Feature: gene Location: 14141-14986 bp Feature: domain Description: AbiEii Location: 14240-14939 bp Feature: domain Description: AbiEii Location: 1 4240-1 4939 bp Feature: gene Location: 15336-17258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15663-16398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5663-1 6398 bp Feature: domain Description: cas_Csn1 Location: 16809-17088 bp Feature: domain Description: cas_Csn1 Location: 1 6809-1 7088 bp Feature: gene Location: 17967-20672 bp Feature: domain Description: Phage_lysozyme2 Location: 19776-20289 bp Feature: domain Description: Phage_lysozyme2 Location: 1 9776-20289 bp Feature: domain Description: PRK08581 Location: 20406-20655 bp Feature: domain Description: PRK08581 Location: 20406-20655 bp Feature: gene Location: 20684-22252 bp Feature: domain Description: TraC-F-type Location: 20843-22079 bp Feature: domain Description: TraC-F-type Location: 20843-22079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), TraC-F-type (TIGR02746)

Seq: CMTP01000002.1 Streptococcus pneumoniae genome assembly 5737_3#11, scaffold ERS096116SCcontig000002, whole genome shotgun sequence (111842 bp)
Overview 1 RT 1: 21272-28630 bp Neighborhood of RT #1 [21272, 28647] EriC TrkA_C xerS RVT-GII GIIM Lip_prot_lig_C AceF lipoamide_DH Feature: gene Location: 21272-22822 bp Feature: domain Description: EriC Location: 21365-22577 bp Feature: domain Description: EriC Location: 2 1365-2 2 577 bp Feature: domain Description: TrkA_C Location: 22622-22817 bp Feature: domain Description: TrkA_C Location: 2 2 62 2 -2 2 817 bp Feature: gene Location: 23406-24476 bp Feature: domain Description: xerS Location: 23409-24474 bp Feature: domain Description: xerS Location: 2 3409-2 4474 bp Feature: gene Location: 25177-26355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25381-25996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5381-2 5996 bp Feature: domain Description: GIIM Note: maturase Location: 26050-26263 bp Feature: domain Description: GIIM Note: maturase Location: 2 6050-2 62 63 bp Feature: gene Location: 26520-26873 bp Feature: domain Description: Lip_prot_lig_C Location: 26613-26859 bp Feature: domain Description: Lip_prot_lig_C Location: 2 6613-2 6859 bp Feature: gene Location: 26944-28647 bp Feature: domain Description: AceF Location: 26947-27244 bp Feature: domain Description: AceF Location: 2 6947-2 72 44 bp Feature: domain Description: lipoamide_DH Location: 27280-28630 bp Feature: domain Description: lipoamide_DH Location: 2 72 80-2 8630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EriC (cd01031), TrkA_C (pfam02080), xerS (PRK05084), RVT-GII, GIIM (pfam08388), Lip_prot_lig_C (pfam10437), AceF (COG0508), lipoamide_DH (TIGR01350)