myRT

myRT report for GCA_001118825.1_5919_1_1

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Seq: CMWH01000087.1 Streptococcus pneumoniae genome assembly 5919_1#1, scaffold ERS095986SCcontig000087, whole genome shotgun sequence (918 bp)
Overview 1 RT 1: 38-761 bp Neighborhood of RT #1 [38, 853] RVT-GII GIIM Feature: gene Location: 38-853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53-494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53-494 bp Feature: domain Description: GIIM Note: maturase Location: 548-761 bp Feature: domain Description: GIIM Note: maturase Location: 548-761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CMWH01000028.1 Streptococcus pneumoniae genome assembly 5919_1#1, scaffold ERS095986SCcontig000028, whole genome shotgun sequence (30532 bp)
Overview 1 RT 1: 5322-12182 bp Neighborhood of RT #1 [5322, 12208] TraC-F-type Peptidase_M23 Phage_lysozyme2 PRK08581 RVT-GII cas_Csn1 DUF2140 DUF4315 Feature: gene Location: 5322-5681 bp Feature: domain Description: TraC-F-type Location: 5337-5529 bp Feature: domain Description: TraC-F-type Location: 5337-552 9 bp Feature: gene Location: 5692-8379 bp Feature: domain Description: Peptidase_M23 Location: 7105-7309 bp Feature: domain Description: Peptidase_M2 3 Location: 7105-7309 bp Feature: domain Description: Phage_lysozyme2 Location: 7480-8020 bp Feature: domain Description: Phage_lysozyme2 Location: 7480-802 0 bp Feature: domain Description: PRK08581 Location: 8146-8362 bp Feature: domain Description: PRK08581 Location: 8146-8362 bp Feature: gene Location: 9088-11010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9415-10150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9415-10150 bp Feature: domain Description: cas_Csn1 Location: 10561-10840 bp Feature: domain Description: cas_Csn1 Location: 10561-10840 bp Feature: gene Location: 11278-11958 bp Feature: domain Description: DUF2140 Location: 11311-11560 bp Feature: domain Description: DUF2 140 Location: 11311-11560 bp Feature: gene Location: 11969-12208 bp Feature: domain Description: DUF4315 Location: 12002-12182 bp Feature: domain Description: DUF4315 Location: 12 002 -12 182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2140 (pfam09911), TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), RVT-GII, cas_Csn1 (TIGR01865)

Seq: CMWH01000061.1 Streptococcus pneumoniae genome assembly 5919_1#1, scaffold ERS095986SCcontig000061, whole genome shotgun sequence (6987 bp)
Overview 1 RT 1: 2521-6055 bp Neighborhood of RT #1 [2521, 6063] RimL PRK12830 RVT-GII Feature: gene Location: 2521-3072 bp Feature: domain Description: RimL Location: 2560-3067 bp Feature: domain Description: RimL Location: 2560-3 067 bp Feature: gene Location: 3088-4347 bp Feature: domain Description: PRK12830 Location: 3091-4342 bp Feature: domain Description: PRK1283 0 Location: 3 091-43 42 bp Feature: gene Location: 5719-6063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5923-6055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5923 -6055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), PRK12830 (UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed), RVT-GII