myRT

myRT report for GCA_001121065.1_6930_7_16

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Seq: CNAI01000001.1 Streptococcus pneumoniae genome assembly 6930_7#16, scaffold ERS096215SCcontig000001, whole genome shotgun sequence (100549 bp)
Overview 1 RT 1: 12477-19835 bp Neighborhood of RT #1 [12477, 19852] EriC TrkA_C xerS RVT-GII GIIM Lip_prot_lig_C AceF lipoamide_DH Feature: gene Location: 12477-14027 bp Feature: domain Description: EriC Location: 12570-13782 bp Feature: domain Description: EriC Location: 1 2570-1 3782 bp Feature: domain Description: TrkA_C Location: 13827-14022 bp Feature: domain Description: TrkA_C Location: 1 3827-1 4022 bp Feature: gene Location: 14611-15681 bp Feature: domain Description: xerS Location: 14614-15679 bp Feature: domain Description: xerS Location: 1 461 4-1 5679 bp Feature: gene Location: 16382-17659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16586-17201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6586-1 7201 bp Feature: domain Description: GIIM Note: maturase Location: 17255-17468 bp Feature: domain Description: GIIM Note: maturase Location: 1 7255-1 7468 bp Feature: gene Location: 17725-18078 bp Feature: domain Description: Lip_prot_lig_C Location: 17818-18064 bp Feature: domain Description: Lip_prot_lig_C Location: 1 781 8-1 8064 bp Feature: gene Location: 18149-19852 bp Feature: domain Description: AceF Location: 18152-18449 bp Feature: domain Description: AceF Location: 1 81 52-1 8449 bp Feature: domain Description: lipoamide_DH Location: 18485-19835 bp Feature: domain Description: lipoamide_DH Location: 1 8485-1 9835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EriC (cd01031), TrkA_C (pfam02080), xerS (PRK05084), RVT-GII, GIIM (pfam08388), Lip_prot_lig_C (pfam10437), AceF (COG0508), lipoamide_DH (TIGR01350)

Seq: CNAI01000022.1 Streptococcus pneumoniae genome assembly 6930_7#16, scaffold ERS096215SCcontig000022, whole genome shotgun sequence (36607 bp)
Overview 1 RT 1: 13615-22899 bp Neighborhood of RT #1 [13615, 23054] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII cas_Csn1 AbiEii COG5340 Feature: gene Location: 13615-15966 bp Feature: domain Description: TraC-F-type Location: 14401-15784 bp Feature: domain Description: TraC-F-type Location: 14401-15784 bp Feature: gene Location: 15963-18641 bp Feature: domain Description: Peptidase_M23 Location: 17409-17613 bp Feature: domain Description: Peptidase_M2 3 Location: 17409-17613 bp Feature: domain Description: Phage_lysozyme2 Location: 17766-18276 bp Feature: domain Description: Phage_lysozyme2 Location: 17766-182 76 bp Feature: domain Description: COG3942 Location: 18354-18624 bp Feature: domain Description: COG3942 Location: 18354-1862 4 bp Feature: gene Location: 19350-21272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19677-20412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19677-2 0412 bp Feature: domain Description: cas_Csn1 Location: 20823-21102 bp Feature: domain Description: cas_Csn1 Location: 2 082 3-2 1102 bp Feature: gene Location: 21622-22467 bp Feature: domain Description: AbiEii Location: 21721-22420 bp Feature: domain Description: AbiEii Location: 2 172 1-2 2 42 0 bp Feature: gene Location: 22464-23054 bp Feature: domain Description: COG5340 Location: 22467-22899 bp Feature: domain Description: COG5340 Location: 2 2 467-2 2 899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, cas_Csn1 (TIGR01865), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system )