myRT

myRT report for GCA_001122765.1_10561_2_56

Download annotations/find similar RTs

Seq: CJGC01000036.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10561_2#56, scaffold ERS325160SCcontig000036, whole genome shotgun sequence (43271 bp)
Overview 1 RT 1: 38097-42906 bp Neighborhood of RT #1 [38097, 42906] type_I_sec_LssB type_I_hlyD type_I_hlyD RVT-UG11 Feature: gene Location: 38097-40277 bp Ori: CHK31910.1 Gene: apxIB_2 Feature: domain Description: type_I_sec_LssB Location: 38157-40230 bp Feature: domain Description: type_I_sec_LssB Location: 381 57-40230 bp Feature: gene Location: 40258-41448 bp Ori: CHK31937.1 Gene: prsE_2 Feature: domain Description: type_I_hlyD Location: 40339-40783 bp Feature: domain Description: type_I_hlyD Location: 40339-40783 bp Feature: domain Description: type_I_hlyD Location: 40822-41446 bp Feature: domain Description: type_I_hlyD Location: 40822-41 446 bp Feature: gene Location: 41991-42764 bp Ori: CHK31968.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 42126-42579 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 421 26-42579 bp Feature: gene Location: 42733-42906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_sec_LssB (TIGR03375), type_I_hlyD (TIGR01843), RVT-UG11

Seq: CJGC01000005.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10561_2#56, scaffold ERS325160SCcontig000005, whole genome shotgun sequence (220879 bp)
Overview 1 RT 1: 211284-217307 bp Neighborhood of RT #1 [211284, 217423] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII RT_Bac_retron_I GIIM Inovirus_Gp2 Mrr_cat Feature: gene Location: 211284-211631 bp Ori: CHJ04569.1 Feature: domain Description: TnpB_IS66 Location: 211311-211602 bp Feature: domain Description: TnpB_IS66 Location: 2 11311-2 11602 bp Feature: gene Location: 211651-213090 bp Ori: CHJ04613.1 Feature: domain Description: LZ_Tnp_IS66 Location: 211789-212014 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 11789-2 12 014 bp Feature: domain Description: zf-IS66 Location: 212035-212167 bp Feature: domain Description: zf-IS66 Location: 2 12 035-2 12 167 bp Feature: domain Description: DDE_Tnp_IS66 Location: 212212-213049 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 12 2 12 -2 13049 bp Feature: gene Location: 213552-214679 bp Ori: CHJ04649.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213753-214140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 13753-2 14140 bp Feature: domain Description: RT_Bac_retron_I Location: 214140-214314 bp Feature: domain Description: RT_Bac_retron_I Location: 2 14140-2 14314 bp Feature: domain Description: GIIM Note: maturase Location: 214380-214605 bp Feature: domain Description: GIIM Note: maturase Location: 2 14380-2 14605 bp Feature: gene Location: 215504-216235 bp Ori: CHJ04678.1 Feature: domain Description: Inovirus_Gp2 Location: 215549-216203 bp Feature: domain Description: Inovirus_Gp2 Location: 2 15549-2 162 03 bp Feature: gene Location: 216563-217423 bp Ori: CHJ04705.1 Feature: domain Description: Mrr_cat Location: 216998-217307 bp Feature: domain Description: Mrr_cat Location: 2 16998-2 17307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, RT_Bac_retron_I (cd01646), GIIM (pfam08388), Inovirus_Gp2 (pfam11726), Mrr_cat (pfam04471)