myRT

myRT report for GCA_001123025.1_5737_2_6

Download annotations/find similar RTs

Seq: CMTN01000006.1 Streptococcus pneumoniae genome assembly 5737_2#6, scaffold ERS096099SCcontig000006, whole genome shotgun sequence (92619 bp)
Overview 1 RT 1: 50466-59193 bp Neighborhood of RT #1 [50466, 59193] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII cas_Csn1 Feature: gene Location: 50466-52817 bp Feature: domain Description: TraC-F-type Location: 51252-52635 bp Feature: domain Description: TraC-F-type Location: 51 252-52635 bp Feature: gene Location: 52814-55492 bp Feature: domain Description: Peptidase_M23 Location: 54260-54464 bp Feature: domain Description: Peptidase_M23 Location: 54260-54464 bp Feature: domain Description: Phage_lysozyme2 Location: 54617-55124 bp Feature: domain Description: Phage_lysozyme2 Location: 5461 7-551 24 bp Feature: domain Description: COG3942 Location: 55244-55475 bp Feature: domain Description: COG3942 Location: 55244-55475 bp Feature: gene Location: 56201-58123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56528-57263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56528-57263 bp Feature: domain Description: cas_Csn1 Location: 57674-57953 bp Feature: domain Description: cas_Csn1 Location: 57674-57953 bp Feature: gene Location: 58419-59027 bp Feature: gene Location: 59029-59193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, cas_Csn1 (TIGR01865)

Seq: CMTN01000007.1 Streptococcus pneumoniae genome assembly 5737_2#6, scaffold ERS096099SCcontig000007, whole genome shotgun sequence (86887 bp)
Overview 1 RT 1: 35291-42412 bp Neighborhood of RT #1 [35291, 42423] rpsA rpsA RVT-GII GIIM Gsh2 PRK09225 Feature: gene Location: 35291-35602 bp Feature: domain Description: rpsA Location: 35294-35573 bp Feature: domain Description: rpsA Location: 352 94-35573 bp Feature: gene Location: 36982-38184 bp Feature: domain Description: rpsA Location: 36985-38173 bp Feature: domain Description: rpsA Location: 36985-38173 bp Feature: gene Location: 38361-39047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38394-38688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38394-38688 bp Feature: domain Description: GIIM Note: maturase Location: 38742-38955 bp Feature: domain Description: GIIM Note: maturase Location: 38742 -38955 bp Feature: gene Location: 39586-40863 bp Feature: domain Description: Gsh2 Location: 39592-40858 bp Feature: domain Description: Gsh2 Location: 39592 -40858 bp Feature: gene Location: 40939-42423 bp Feature: domain Description: PRK09225 Location: 40954-42412 bp Feature: domain Description: PRK092 2 5 Location: 40954-42 412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), RVT-GII, GIIM (pfam08388), Gsh2 (COG3572), PRK09225 (threonine synthase; Validated)

Seq: CMTN01000023.1 Streptococcus pneumoniae genome assembly 5737_2#6, scaffold ERS096099SCcontig000023, whole genome shotgun sequence (30869 bp)
Overview 1 RT 1: 21356-28665 bp Neighborhood of RT #1 [21356, 28667] EriC TrkA_C xerS RVT-GII GIIM LuxS COG4868 Feature: gene Location: 21356-22906 bp Feature: domain Description: EriC Location: 21449-22661 bp Feature: domain Description: EriC Location: 21449-22661 bp Feature: domain Description: TrkA_C Location: 22706-22901 bp Feature: domain Description: TrkA_C Location: 22706-22901 bp Feature: gene Location: 23490-24560 bp Feature: domain Description: xerS Location: 23493-24558 bp Feature: domain Description: xerS Location: 23 493 -24558 bp Feature: gene Location: 25262-26440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25466-26081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25466-26081 bp Feature: domain Description: GIIM Note: maturase Location: 26135-26348 bp Feature: domain Description: GIIM Note: maturase Location: 2613 5-263 48 bp Feature: gene Location: 26606-27088 bp Feature: domain Description: LuxS Location: 26624-27083 bp Feature: domain Description: LuxS Location: 26624-27083 bp Feature: gene Location: 27183-28667 bp Feature: domain Description: COG4868 Location: 27189-28665 bp Feature: domain Description: COG4868 Location: 27189-28665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EriC (cd01031), TrkA_C (pfam02080), xerS (PRK05084), RVT-GII, GIIM (pfam08388), LuxS (pfam02664), COG4868 (Uncharacterized protein, UPF0371 family )