myRT

myRT report for GCA_001123565.1_9803_8_73

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Seq: CMSS01000012.1 Streptococcus pneumoniae genome assembly 9803_8#73, scaffold ERS232585SCcontig000012, whole genome shotgun sequence (59074 bp)
Overview 1 RT 1: 45746-50405 bp Neighborhood of RT #1 [45746, 50405] MFS_MefA_like GIIM RVT-GII GIIM Feature: gene Location: 45746-46924 bp Feature: domain Description: MFS_MefA_like Location: 45761-46904 bp Feature: domain Description: MFS_MefA_like Location: 45761 -46904 bp Feature: gene Location: 47376-47684 bp Feature: domain Description: GIIM Note: maturase Location: 47403-47493 bp Feature: domain Description: GIIM Note: maturase Location: 47403-47493 bp Feature: gene Location: 47645-48652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47849-48464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47849-48464 bp Feature: domain Description: GIIM Note: maturase Location: 48518-48647 bp Feature: domain Description: GIIM Note: maturase Location: 4851 8-48647 bp Feature: gene Location: 49468-49665 bp Feature: gene Location: 49746-50405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MefA_like (cd06173), GIIM (pfam08388), RVT-GII

Seq: CMSS01000011.1 Streptococcus pneumoniae genome assembly 9803_8#73, scaffold ERS232585SCcontig000011, whole genome shotgun sequence (59333 bp)
Overview 1 RT 1: 35518-44802 bp Neighborhood of RT #1 [35518, 44957] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII cas_Csn1 AbiEii COG5340 Feature: gene Location: 35518-37869 bp Feature: domain Description: TraC-F-type Location: 36304-37687 bp Feature: domain Description: TraC-F-type Location: 36304-37687 bp Feature: gene Location: 37866-40544 bp Feature: domain Description: Peptidase_M23 Location: 39312-39516 bp Feature: domain Description: Peptidase_M2 3 Location: 39312 -39516 bp Feature: domain Description: Phage_lysozyme2 Location: 39669-40176 bp Feature: domain Description: Phage_lysozyme2 Location: 39669-40176 bp Feature: domain Description: COG3942 Location: 40296-40527 bp Feature: domain Description: COG3942 Location: 402 96-4052 7 bp Feature: gene Location: 41253-43175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41580-42315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41580-42 315 bp Feature: domain Description: cas_Csn1 Location: 42726-43005 bp Feature: domain Description: cas_Csn1 Location: 42 72 6-43005 bp Feature: gene Location: 43525-44370 bp Feature: domain Description: AbiEii Location: 43624-44323 bp Feature: domain Description: AbiEii Location: 4362 4-4432 3 bp Feature: gene Location: 44367-44957 bp Feature: domain Description: COG5340 Location: 44370-44802 bp Feature: domain Description: COG5340 Location: 44370-44802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, cas_Csn1 (TIGR01865), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system )