myRT

myRT report for GCA_001126845.1_6899_4_16

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Seq: CLCU01000022.1 Streptococcus pneumoniae genome assembly 6899_4#16, scaffold ERS021542SCcontig000022, whole genome shotgun sequence (42861 bp)
Overview 1 RT 1: 13674-22931 bp Neighborhood of RT #1 [13674, 23113] COG5340 AbiEii RVT-GII cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Feature: gene Location: 13674-14264 bp Feature: domain Description: COG5340 Location: 13677-14109 bp Feature: domain Description: COG5340 Location: 1 3677-1 41 09 bp Feature: gene Location: 14261-15106 bp Feature: domain Description: AbiEii Location: 14360-15059 bp Feature: domain Description: AbiEii Location: 1 4360-1 5059 bp Feature: gene Location: 15456-17378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15783-16518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5783-1 651 8 bp Feature: domain Description: cas_Csn1 Location: 16929-17208 bp Feature: domain Description: cas_Csn1 Location: 1 6929-1 7208 bp Feature: gene Location: 18087-20765 bp Feature: domain Description: Peptidase_M23 Location: 19533-19737 bp Feature: domain Description: Peptidase_M23 Location: 1 9533-1 9737 bp Feature: domain Description: Phage_lysozyme2 Location: 19890-20397 bp Feature: domain Description: Phage_lysozyme2 Location: 1 9890-20397 bp Feature: domain Description: COG3942 Location: 20517-20748 bp Feature: domain Description: COG3942 Location: 2051 7-20748 bp Feature: gene Location: 20762-23113 bp Feature: domain Description: TraC-F-type Location: 21548-22931 bp Feature: domain Description: TraC-F-type Location: 21 548-22931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746)

Seq: CLCU01000051.1 Streptococcus pneumoniae genome assembly 6899_4#16, scaffold ERS021542SCcontig000051, whole genome shotgun sequence (5916 bp)
Overview 1 RT 1: 310-3713 bp Neighborhood of RT #1 [310, 3715] RVT-GII GIIM LuxS COG4868 Feature: gene Location: 310-1488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514-1129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514-112 9 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1396 bp Feature: gene Location: 1654-2136 bp Feature: domain Description: LuxS Location: 1672-2131 bp Feature: domain Description: LuxS Location: 1672 -2 131 bp Feature: gene Location: 2231-3715 bp Feature: domain Description: COG4868 Location: 2237-3713 bp Feature: domain Description: COG4868 Location: 2 2 37-3713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LuxS (pfam02664), COG4868 (Uncharacterized protein, UPF0371 family ), RVT-GII, GIIM (pfam08388)