myRT

myRT report for GCA_001129705.1_5737_2_12

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Seq: CMTI01000006.1 Streptococcus pneumoniae genome assembly 5737_2#12, scaffold ERS096105SCcontig000006, whole genome shotgun sequence (87991 bp)
Overview 1 RT 1: 154-3984 bp Neighborhood of RT #1 [154, 3989] RVT-GII RVT-GII GlpF Feature: gene Location: 154-603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 169-532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 69-532 bp Feature: gene Location: 588-1001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 792-999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 792-999 bp Feature: gene Location: 2111-2698 bp Feature: gene Location: 3285-3989 bp Feature: domain Description: GlpF Location: 3288-3984 bp Feature: domain Description: GlpF Location: 3288-3984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GlpF (COG0580)

Seq: CMTI01000020.1 Streptococcus pneumoniae genome assembly 5737_2#12, scaffold ERS096105SCcontig000020, whole genome shotgun sequence (39905 bp)
Overview 1 RT 1: 21678-30935 bp Neighborhood of RT #1 [21678, 31117] COG5340 AbiEii RVT-GII KOG4768 cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Feature: gene Location: 21678-22268 bp Feature: domain Description: COG5340 Location: 21681-22113 bp Feature: domain Description: COG5340 Location: 2 1681-2 2 113 bp Feature: gene Location: 22265-23110 bp Feature: domain Description: AbiEii Location: 22364-23063 bp Feature: domain Description: AbiEii Location: 2 2 364-2 3063 bp Feature: gene Location: 23460-25382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23787-24522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3787-2 452 2 bp Feature: domain Description: KOG4768 Location: 24669-24774 bp Feature: domain Description: KOG4768 Location: 2 4669-2 4774 bp Feature: domain Description: cas_Csn1 Location: 24933-25212 bp Feature: domain Description: cas_Csn1 Location: 2 4933-2 52 12 bp Feature: gene Location: 26091-28769 bp Feature: domain Description: Peptidase_M23 Location: 27537-27741 bp Feature: domain Description: Peptidase_M2 3 Location: 2 7537-2 7741 bp Feature: domain Description: Phage_lysozyme2 Location: 27894-28404 bp Feature: domain Description: Phage_lysozyme2 Location: 2 7894-2 8404 bp Feature: domain Description: COG3942 Location: 28479-28752 bp Feature: domain Description: COG3942 Location: 2 8479-2 8752 bp Feature: gene Location: 28766-31117 bp Feature: domain Description: TraC-F-type Location: 29552-30935 bp Feature: domain Description: TraC-F-type Location: 2 9552 -30935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746)

Seq: CMTI01000008.1 Streptococcus pneumoniae genome assembly 5737_2#12, scaffold ERS096105SCcontig000008, whole genome shotgun sequence (78087 bp)
Overview 1 RT 1: 62891-67840 bp Neighborhood of RT #1 [62891, 67863] MFS_MefA_like GIIM GIIM RVT-GII hyperosmo_Ebh PucR Feature: gene Location: 62891-64069 bp Feature: domain Description: MFS_MefA_like Location: 62906-64049 bp Feature: domain Description: MFS_MefA_like Location: 62906-64049 bp Feature: gene Location: 64525-64806 bp Feature: domain Description: GIIM Note: maturase Location: 64531-64615 bp Feature: domain Description: GIIM Note: maturase Location: 6453 1-64615 bp Feature: domain Description: GIIM Note: maturase Location: 64657-64720 bp Feature: domain Description: GIIM Note: maturase Location: 64657-64720 bp Feature: gene Location: 64934-65383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64949-65312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64949-653 12 bp Feature: gene Location: 66138-66515 bp Feature: domain Description: hyperosmo_Ebh Location: 66192-66507 bp Feature: domain Description: hyperosmo_Ebh Location: 66192-66507 bp Feature: gene Location: 66979-67863 bp Feature: domain Description: PucR Location: 66991-67840 bp Feature: domain Description: PucR Location: 66991-67840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MefA_like (cd06173), GIIM (pfam08388), RVT-GII, hyperosmo_Ebh (TIGR04264), PucR (pfam07905)