myRT

myRT report for GCA_001129805.1_5750_2_11

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Seq: CMUZ01000019.1 Streptococcus pneumoniae genome assembly 5750_2#11, scaffold ERS096044SCcontig000019, whole genome shotgun sequence (39354 bp)
Overview 1 RT 1: 10687-18056 bp Neighborhood of RT #1 [10687, 18061] AceF lipoamide_DH Lip_prot_lig_C RVT-GII GIIM xerS EriC TrkA_C Feature: gene Location: 10687-12390 bp Feature: domain Description: AceF Location: 10690-10987 bp Feature: domain Description: AceF Location: 1 0690-1 0987 bp Feature: domain Description: lipoamide_DH Location: 11023-12373 bp Feature: domain Description: lipoamide_DH Location: 1 1 023-1 2373 bp Feature: gene Location: 12461-12814 bp Feature: domain Description: Lip_prot_lig_C Location: 12554-12800 bp Feature: domain Description: Lip_prot_lig_C Location: 1 2554-1 2800 bp Feature: gene Location: 12978-14156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13182-13797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 82-1 3797 bp Feature: domain Description: GIIM Note: maturase Location: 13851-14064 bp Feature: domain Description: GIIM Note: maturase Location: 1 3851 -1 4064 bp Feature: gene Location: 14857-15927 bp Feature: domain Description: xerS Location: 14860-15925 bp Feature: domain Description: xerS Location: 1 4860-1 5925 bp Feature: gene Location: 16511-18061 bp Feature: domain Description: EriC Location: 16604-17816 bp Feature: domain Description: EriC Location: 1 6604-1 781 6 bp Feature: domain Description: TrkA_C Location: 17861-18056 bp Feature: domain Description: TrkA_C Location: 1 7861 -1 8056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AceF (COG0508), lipoamide_DH (TIGR01350), Lip_prot_lig_C (pfam10437), RVT-GII, GIIM (pfam08388), xerS (PRK05084), EriC (cd01031), TrkA_C (pfam02080)

Seq: CMUZ01000016.1 Streptococcus pneumoniae genome assembly 5750_2#11, scaffold ERS096044SCcontig000016, whole genome shotgun sequence (54442 bp)
Overview 1 RT 1: 31483-40767 bp Neighborhood of RT #1 [31483, 40922] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII KOG4768 cas_Csn1 AbiEii COG5340 Feature: gene Location: 31483-33834 bp Feature: domain Description: TraC-F-type Location: 32269-33652 bp Feature: domain Description: TraC-F-type Location: 32 2 69-33652 bp Feature: gene Location: 33831-36509 bp Feature: domain Description: Peptidase_M23 Location: 35277-35481 bp Feature: domain Description: Peptidase_M2 3 Location: 352 77-35481 bp Feature: domain Description: Phage_lysozyme2 Location: 35634-36144 bp Feature: domain Description: Phage_lysozyme2 Location: 35634-36144 bp Feature: domain Description: COG3942 Location: 36219-36492 bp Feature: domain Description: COG3942 Location: 362 19-36492 bp Feature: gene Location: 37218-39140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37545-38280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37545-382 80 bp Feature: domain Description: KOG4768 Location: 38427-38532 bp Feature: domain Description: KOG4768 Location: 3842 7-38532 bp Feature: domain Description: cas_Csn1 Location: 38691-38970 bp Feature: domain Description: cas_Csn1 Location: 38691-38970 bp Feature: gene Location: 39490-40335 bp Feature: domain Description: AbiEii Location: 39589-40288 bp Feature: domain Description: AbiEii Location: 39589-402 88 bp Feature: gene Location: 40332-40922 bp Feature: domain Description: COG5340 Location: 40335-40767 bp Feature: domain Description: COG5340 Location: 40335-40767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), cas_Csn1 (TIGR01865), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system )