myRT

myRT report for GCA_001132745.1_5756_5_1

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Seq: CMVP01000003.1 Streptococcus pneumoniae genome assembly 5756_5#1, scaffold ERS096046SCcontig000003, whole genome shotgun sequence (78175 bp)
Overview 1 RT 1: 22609-31866 bp Neighborhood of RT #1 [22609, 32048] COG5340 AbiEii RVT-GII KOG4768 cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Feature: gene Location: 22609-23199 bp Feature: domain Description: COG5340 Location: 22612-23044 bp Feature: domain Description: COG5340 Location: 2261 2-23044 bp Feature: gene Location: 23196-24041 bp Feature: domain Description: AbiEii Location: 23295-23994 bp Feature: domain Description: AbiEii Location: 23295-23994 bp Feature: gene Location: 24391-26313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24718-25453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2471 8-25453 bp Feature: domain Description: KOG4768 Location: 25600-25705 bp Feature: domain Description: KOG4768 Location: 25600-25705 bp Feature: domain Description: cas_Csn1 Location: 25864-26143 bp Feature: domain Description: cas_Csn1 Location: 25864-261 43 bp Feature: gene Location: 27022-29700 bp Feature: domain Description: Peptidase_M23 Location: 28468-28672 bp Feature: domain Description: Peptidase_M23 Location: 28468-28672 bp Feature: domain Description: Phage_lysozyme2 Location: 28825-29335 bp Feature: domain Description: Phage_lysozyme2 Location: 28825-29335 bp Feature: domain Description: COG3942 Location: 29410-29683 bp Feature: domain Description: COG3942 Location: 2941 0-29683 bp Feature: gene Location: 29697-32048 bp Feature: domain Description: TraC-F-type Location: 30483-31866 bp Feature: domain Description: TraC-F-type Location: 30483-31 866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746)

Seq: CMVP01000034.1 Streptococcus pneumoniae genome assembly 5756_5#1, scaffold ERS096046SCcontig000034, whole genome shotgun sequence (23403 bp)
Overview 1 RT 1: 19618-22832 bp Neighborhood of RT #1 [19618, 23023] COG4868 LuxS RVT-GII GIIM Feature: gene Location: 19618-21102 bp Feature: domain Description: COG4868 Location: 19624-21100 bp Feature: domain Description: COG4868 Location: 1962 4-2 1100 bp Feature: gene Location: 21197-21679 bp Feature: domain Description: LuxS Location: 21215-21674 bp Feature: domain Description: LuxS Location: 2 12 15-2 1674 bp Feature: gene Location: 21746-23023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21953-22565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1953-2 2 565 bp Feature: domain Description: GIIM Note: maturase Location: 22619-22832 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 619-2 2 832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4868 (Uncharacterized protein, UPF0371 family ), LuxS (pfam02664), RVT-GII, GIIM (pfam08388)