myRT

myRT report for GCA_001134165.1_10493_1_8

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Seq: CJCV01000031.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10493_1#8, scaffold ERS326226SCcontig000031, whole genome shotgun sequence (43294 bp)
Overview 1 RT 1: 38112-42921 bp Neighborhood of RT #1 [38112, 42921] type_I_sec_LssB type_I_hlyD type_I_hlyD RVT-UG11 Feature: gene Location: 38112-40292 bp Ori: CHF37372.1 Gene: apxIB_2 Feature: domain Description: type_I_sec_LssB Location: 38172-40245 bp Feature: domain Description: type_I_sec_LssB Location: 381 72-40245 bp Feature: gene Location: 40273-41463 bp Ori: CHF37409.1 Gene: prsE_2 Feature: domain Description: type_I_hlyD Location: 40354-40798 bp Feature: domain Description: type_I_hlyD Location: 40354-40798 bp Feature: domain Description: type_I_hlyD Location: 40837-41461 bp Feature: domain Description: type_I_hlyD Location: 40837-41 461 bp Feature: gene Location: 42006-42779 bp Ori: CHF37449.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 42141-42594 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 421 41 -42594 bp Feature: gene Location: 42748-42921 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_sec_LssB (TIGR03375), type_I_hlyD (TIGR01843), RVT-UG11

Seq: CJCV01000001.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10493_1#8, scaffold ERS326226SCcontig000001, whole genome shotgun sequence (468674 bp)
Overview 1 RT 1: 459083-465106 bp Neighborhood of RT #1 [459083, 465222] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII RT_Bac_retron_I GIIM Inovirus_Gp2 Mrr_cat Feature: gene Location: 459083-459430 bp Ori: CHD98966.1 Feature: domain Description: TnpB_IS66 Location: 459110-459401 bp Feature: domain Description: TnpB_IS66 Location: 459110-459401 bp Feature: gene Location: 459450-460889 bp Ori: CHD98987.1 Feature: domain Description: LZ_Tnp_IS66 Location: 459588-459813 bp Feature: domain Description: LZ_Tnp_IS66 Location: 459588-459813 bp Feature: domain Description: zf-IS66 Location: 459834-459966 bp Feature: domain Description: zf-IS66 Location: 459834-459966 bp Feature: domain Description: DDE_Tnp_IS66 Location: 460011-460848 bp Feature: domain Description: DDE_Tnp_IS66 Location: 460011-460848 bp Feature: gene Location: 461351-462478 bp Ori: CHD99013.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461552-461939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461552 -461939 bp Feature: domain Description: RT_Bac_retron_I Location: 461939-462113 bp Feature: domain Description: RT_Bac_retron_I Location: 461939-462 113 bp Feature: domain Description: GIIM Note: maturase Location: 462179-462404 bp Feature: domain Description: GIIM Note: maturase Location: 462 179-462 404 bp Feature: gene Location: 463303-464034 bp Ori: CHD99042.1 Feature: domain Description: Inovirus_Gp2 Location: 463348-464002 bp Feature: domain Description: Inovirus_Gp2 Location: 463348-464002 bp Feature: gene Location: 464362-465222 bp Ori: CHD99071.1 Feature: domain Description: Mrr_cat Location: 464797-465106 bp Feature: domain Description: Mrr_cat Location: 464797-465106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, RT_Bac_retron_I (cd01646), GIIM (pfam08388), Inovirus_Gp2 (pfam11726), Mrr_cat (pfam04471)