myRT

myRT report for GCA_001137525.1_6680_5_1

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Seq: CIMK01000025.1 Streptococcus pneumoniae genome assembly 6680_5#1, scaffold ERS020423SCcontig000025, whole genome shotgun sequence (32572 bp)
Overview 1 RT 1: 28142-31676 bp Neighborhood of RT #1 [28142, 31846] COG5340 AbiEii RVT-GII cas_Csn1 Feature: gene Location: 28142-28732 bp Feature: domain Description: COG5340 Location: 28145-28577 bp Feature: domain Description: COG5340 Location: 281 45-28577 bp Feature: gene Location: 28729-29574 bp Feature: domain Description: AbiEii Location: 28828-29527 bp Feature: domain Description: AbiEii Location: 28828-29527 bp Feature: gene Location: 29924-31846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30251-30986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30251 -30986 bp Feature: domain Description: cas_Csn1 Location: 31397-31676 bp Feature: domain Description: cas_Csn1 Location: 31 397-31 676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865)

Seq: CIMK01000050.1 Streptococcus pneumoniae genome assembly 6680_5#1, scaffold ERS020423SCcontig000050, whole genome shotgun sequence (6419 bp)
Overview 1 RT 1: 2210-5523 bp Neighborhood of RT #1 [2210, 5615] COG4868 LuxS RVT-GII GIIM Feature: gene Location: 2210-3694 bp Feature: domain Description: COG4868 Location: 2216-3692 bp Feature: domain Description: COG4868 Location: 2 2 16-3692 bp Feature: gene Location: 3789-4271 bp Feature: domain Description: LuxS Location: 3807-4266 bp Feature: domain Description: LuxS Location: 3807-42 66 bp Feature: gene Location: 4437-5615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4641-5256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4641-52 56 bp Feature: domain Description: GIIM Note: maturase Location: 5310-5523 bp Feature: domain Description: GIIM Note: maturase Location: 5310-552 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4868 (Uncharacterized protein, UPF0371 family ), LuxS (pfam02664), RVT-GII, GIIM (pfam08388)