myRT

myRT report for GCA_001139205.1_5737_7_7

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Seq: CMUT01000061.1 Streptococcus pneumoniae genome assembly 5737_7#7, scaffold ERS096016SCcontig000061, whole genome shotgun sequence (5843 bp)
Overview 1 RT 1: 259-3662 bp Neighborhood of RT #1 [259, 3664] RVT-GII GIIM LuxS COG4868 Feature: gene Location: 259-1437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1 078 bp Feature: domain Description: GIIM Note: maturase Location: 1132-1345 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 32-1 345 bp Feature: gene Location: 1603-2085 bp Feature: domain Description: LuxS Location: 1621-2080 bp Feature: domain Description: LuxS Location: 1 621 -2080 bp Feature: gene Location: 2180-3664 bp Feature: domain Description: COG4868 Location: 2186-3662 bp Feature: domain Description: COG4868 Location: 21 86-3662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LuxS (pfam02664), COG4868 (Uncharacterized protein, UPF0371 family ), RVT-GII, GIIM (pfam08388)

Seq: CMUT01000006.1 Streptococcus pneumoniae genome assembly 5737_7#7, scaffold ERS096016SCcontig000006, whole genome shotgun sequence (85417 bp)
Overview 1 RT 1: 34712-40949 bp Neighborhood of RT #1 [34712, 40960] DUF2969 rpsA RVT-GII GIIM Gsh2 PRK09225 Feature: gene Location: 34712-34942 bp Feature: domain Description: DUF2969 Location: 34715-34934 bp Feature: domain Description: DUF2 969 Location: 34715-34934 bp Feature: gene Location: 35481-36683 bp Feature: domain Description: rpsA Location: 35484-36672 bp Feature: domain Description: rpsA Location: 35484-36672 bp Feature: gene Location: 36860-37675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36875-37316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36875-37316 bp Feature: domain Description: GIIM Note: maturase Location: 37370-37583 bp Feature: domain Description: GIIM Note: maturase Location: 37370-37583 bp Feature: gene Location: 38123-39400 bp Feature: domain Description: Gsh2 Location: 38129-39395 bp Feature: domain Description: Gsh2 Location: 3812 9-39395 bp Feature: gene Location: 39476-40960 bp Feature: domain Description: PRK09225 Location: 39491-40949 bp Feature: domain Description: PRK092 2 5 Location: 39491-40949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2969 (pfam11184), rpsA (TIGR00717), RVT-GII, GIIM (pfam08388), Gsh2 (COG3572), PRK09225 (threonine synthase; Validated)

Seq: CMUT01000008.1 Streptococcus pneumoniae genome assembly 5737_7#7, scaffold ERS096016SCcontig000008, whole genome shotgun sequence (75945 bp)
Overview 1 RT 1: 19661-28490 bp Neighborhood of RT #1 [19661, 28516] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII cas_Csn1 DUF2140 DUF4315 Feature: gene Location: 19661-22012 bp Feature: domain Description: TraC-F-type Location: 20447-21830 bp Feature: domain Description: TraC-F-type Location: 20447-2183 0 bp Feature: gene Location: 22009-24687 bp Feature: domain Description: Peptidase_M23 Location: 23455-23659 bp Feature: domain Description: Peptidase_M23 Location: 23 455-23 659 bp Feature: domain Description: Phage_lysozyme2 Location: 23812-24319 bp Feature: domain Description: Phage_lysozyme2 Location: 23 812-243 19 bp Feature: domain Description: COG3942 Location: 24439-24670 bp Feature: domain Description: COG3 942 Location: 2443 9-24670 bp Feature: gene Location: 25396-27318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25723-26458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25723 -26458 bp Feature: domain Description: cas_Csn1 Location: 26869-27148 bp Feature: domain Description: cas_Csn1 Location: 26869-27148 bp Feature: gene Location: 27586-28266 bp Feature: domain Description: DUF2140 Location: 27619-27868 bp Feature: domain Description: DUF2140 Location: 27619-27868 bp Feature: gene Location: 28277-28516 bp Feature: domain Description: DUF4315 Location: 28310-28490 bp Feature: domain Description: DUF43 15 Location: 283 10-28490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, cas_Csn1 (TIGR01865), DUF2140 (pfam09911), DUF4315 (pfam14193)