myRT

myRT report for GCA_001140205.1_6938_8_19

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Seq: CLNG01000005.1 Streptococcus pneumoniae genome assembly 6938_8#19, scaffold ERS022241SCcontig000005, whole genome shotgun sequence (117717 bp)
Overview 1 RT 1: 50184-57530 bp Neighborhood of RT #1 [50184, 57547] EriC TrkA_C xerS RVT-GII GIIM SalY LolD Feature: gene Location: 50184-51734 bp Feature: domain Description: EriC Location: 50277-51489 bp Feature: domain Description: EriC Location: 50277-51 489 bp Feature: domain Description: TrkA_C Location: 51534-51729 bp Feature: domain Description: TrkA_C Location: 51 534-51 729 bp Feature: gene Location: 52318-53388 bp Feature: domain Description: xerS Location: 52321-53386 bp Feature: domain Description: xerS Location: 52321 -53386 bp Feature: gene Location: 54090-55259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54294-54909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54294-54909 bp Feature: domain Description: GIIM Note: maturase Location: 54963-55176 bp Feature: domain Description: GIIM Note: maturase Location: 54963-551 76 bp Feature: gene Location: 55610-56887 bp Feature: domain Description: SalY Location: 55775-56879 bp Feature: domain Description: SalY Location: 55775-56879 bp Feature: gene Location: 56900-57547 bp Feature: domain Description: LolD Location: 56915-57530 bp Feature: domain Description: LolD Location: 5691 5-57530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EriC (cd01031), TrkA_C (pfam02080), xerS (PRK05084), RVT-GII, GIIM (pfam08388), SalY (COG0577), LolD (COG1136)

Seq: CLNG01000022.1 Streptococcus pneumoniae genome assembly 6938_8#19, scaffold ERS022241SCcontig000022, whole genome shotgun sequence (36604 bp)
Overview 1 RT 1: 13674-20705 bp Neighborhood of RT #1 [13674, 20722] COG5340 AbiEii RVT-GII KOG4768 cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 Feature: gene Location: 13674-14264 bp Feature: domain Description: COG5340 Location: 13677-14109 bp Feature: domain Description: COG5340 Location: 13677-14109 bp Feature: gene Location: 14261-15106 bp Feature: domain Description: AbiEii Location: 14360-15059 bp Feature: domain Description: AbiEii Location: 14360-15059 bp Feature: gene Location: 15456-17009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15459-16149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15459-16149 bp Feature: domain Description: KOG4768 Location: 16296-16401 bp Feature: domain Description: KOG4768 Location: 162 96-16401 bp Feature: domain Description: cas_Csn1 Location: 16560-16839 bp Feature: domain Description: cas_Csn1 Location: 16560-16839 bp Feature: gene Location: 17162-17335 bp Feature: gene Location: 18044-20722 bp Feature: domain Description: Peptidase_M23 Location: 19490-19694 bp Feature: domain Description: Peptidase_M2 3 Location: 19490-19694 bp Feature: domain Description: Phage_lysozyme2 Location: 19847-20354 bp Feature: domain Description: Phage_lysozyme2 Location: 19847-2 0354 bp Feature: domain Description: COG3942 Location: 20474-20705 bp Feature: domain Description: COG3942 Location: 2 0474-2 0705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen )