myRT

myRT report for GCA_001141025.1_5756_5_2

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Seq: CMVG01000012.1 Streptococcus pneumoniae genome assembly 5756_5#2, scaffold ERS096047SCcontig000012, whole genome shotgun sequence (57517 bp)
Overview 1 RT 1: 34570-43854 bp Neighborhood of RT #1 [34570, 44009] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII KOG4768 cas_Csn1 AbiEii COG5340 Feature: gene Location: 34570-36921 bp Ori: CKI68521.1 Feature: domain Description: TraC-F-type Location: 35356-36739 bp Feature: domain Description: TraC-F-type Location: 35356-36739 bp Feature: gene Location: 36918-39596 bp Ori: CKI68548.1 Feature: domain Description: Peptidase_M23 Location: 38364-38568 bp Feature: domain Description: Peptidase_M23 Location: 38364-38568 bp Feature: domain Description: Phage_lysozyme2 Location: 38721-39231 bp Feature: domain Description: Phage_lysozyme2 Location: 38721 -39231 bp Feature: domain Description: COG3942 Location: 39306-39579 bp Feature: domain Description: COG3942 Location: 39306-39579 bp Feature: gene Location: 40305-42227 bp Ori: CKI68580.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40632-41367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40632-41 367 bp Feature: domain Description: KOG4768 Location: 41514-41619 bp Feature: domain Description: KOG4768 Location: 41 51 4-41 61 9 bp Feature: domain Description: cas_Csn1 Location: 41778-42057 bp Feature: domain Description: cas_Csn1 Location: 41 778-42057 bp Feature: gene Location: 42577-43422 bp Ori: CKI68607.1 Gene: abiGII Feature: domain Description: AbiEii Location: 42676-43375 bp Feature: domain Description: AbiEii Location: 42676-43375 bp Feature: gene Location: 43419-44009 bp Ori: CKI68636.1 Feature: domain Description: COG5340 Location: 43422-43854 bp Feature: domain Description: COG5340 Location: 43422-43854 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CMVG01000021.1 Streptococcus pneumoniae genome assembly 5756_5#2, scaffold ERS096047SCcontig000021, whole genome shotgun sequence (33543 bp)
Overview 1 RT 1: 4624-12310 bp Neighborhood of RT #1 [4624, 12315] OppA RfaL RVT-GII xerS EriC TrkA_C Feature: gene Location: 4624-6603 bp Ori: CKI82027.1 Gene: amiA Feature: domain Description: OppA Location: 4627-6487 bp Feature: domain Description: OppA Location: 462 7-6487 bp Feature: gene Location: 7290-7964 bp Ori: CKI82080.1 Feature: domain Description: RfaL Location: 7305-7935 bp Feature: domain Description: RfaL Location: 7305-7935 bp Feature: gene Location: 8012-8356 bp Ori: CKI82100.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8219-8321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 19-832 1 bp Feature: gene Location: 9111-10181 bp Ori: CKI82134.1 Gene: xerS Feature: domain Description: xerS Location: 9114-10179 bp Feature: domain Description: xerS Location: 9114-10179 bp Feature: gene Location: 10765-12315 bp Ori: CKI82168.1 Gene: clcA Feature: domain Description: EriC Location: 10858-12070 bp Feature: domain Description: EriC Location: 10858-12 070 bp Feature: domain Description: TrkA_C Location: 12115-12310 bp Feature: domain Description: TrkA_C Location: 12 115-12 310 bp Sorry, your browser does not support inline SVG.
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