myRT

myRT report for GCA_001141205.1_10541_2_14

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Seq: CJDK01000002.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10541_2#14, scaffold ERS326308SCcontig000002, whole genome shotgun sequence (261484 bp)
Overview 1 RT 1: 251795-257923 bp Neighborhood of RT #1 [251795, 258039] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM Inovirus_Gp2 Mrr_cat Feature: gene Location: 251795-252142 bp Ori: CHE98613.1 Feature: domain Description: TnpB_IS66 Location: 251822-252113 bp Feature: domain Description: TnpB_IS66 Location: 251 822-2521 1 3 bp Feature: gene Location: 252162-253601 bp Ori: CHE98645.1 Feature: domain Description: LZ_Tnp_IS66 Location: 252300-252525 bp Feature: domain Description: LZ_Tnp_IS66 Location: 252300-252525 bp Feature: domain Description: zf-IS66 Location: 252546-252678 bp Feature: domain Description: zf-IS66 Location: 252546-252678 bp Feature: domain Description: DDE_Tnp_IS66 Location: 252723-253560 bp Feature: domain Description: DDE_Tnp_IS66 Location: 252723-253560 bp Feature: gene Location: 254063-255295 bp Ori: CHE98681.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254264-254918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254264-25491 8 bp Feature: domain Description: GIIM Note: maturase Location: 254996-255218 bp Feature: domain Description: GIIM Note: maturase Location: 254996-25521 8 bp Feature: gene Location: 256120-256851 bp Ori: CHE98712.1 Feature: domain Description: Inovirus_Gp2 Location: 256165-256819 bp Feature: domain Description: Inovirus_Gp2 Location: 2561 65-25681 9 bp Feature: gene Location: 257179-258039 bp Ori: CHE98735.1 Feature: domain Description: Mrr_cat Location: 257614-257923 bp Feature: domain Description: Mrr_cat Location: 25761 4-257923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), Inovirus_Gp2 (pfam11726), Mrr_cat (pfam04471)

Seq: CJDK01000036.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10541_2#14, scaffold ERS326308SCcontig000036, whole genome shotgun sequence (43339 bp)
Overview 1 RT 1: 38160-42969 bp Neighborhood of RT #1 [38160, 42969] type_I_sec_LssB type_I_hlyD type_I_hlyD RVT-UG11 Feature: gene Location: 38160-40340 bp Ori: CHG34434.1 Gene: apxIB_2 Feature: domain Description: type_I_sec_LssB Location: 38220-40293 bp Feature: domain Description: type_I_sec_LssB Location: 382 2 0-402 93 bp Feature: gene Location: 40321-41511 bp Ori: CHG34467.1 Gene: prsE_2 Feature: domain Description: type_I_hlyD Location: 40402-40846 bp Feature: domain Description: type_I_hlyD Location: 40402 -40846 bp Feature: domain Description: type_I_hlyD Location: 40885-41509 bp Feature: domain Description: type_I_hlyD Location: 40885-41509 bp Feature: gene Location: 42054-42827 bp Ori: CHG34518.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 42189-42642 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 42 189-42 642 bp Feature: gene Location: 42796-42969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_sec_LssB (TIGR03375), type_I_hlyD (TIGR01843), RVT-UG11