myRT

myRT report for GCA_001149165.1_10492_1_4

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Seq: CIZQ01000003.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10492_1#4, scaffold ERS326221SCcontig000003, whole genome shotgun sequence (261491 bp)
Overview 1 RT 1: 3455-9670 bp Neighborhood of RT #1 [3455, 9699] Mrr_cat Inovirus_Gp2 RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 3455-4315 bp Ori: CGZ58212.1 Feature: domain Description: Mrr_cat Location: 3890-4199 bp Feature: domain Description: Mrr_cat Location: 3890-41 99 bp Feature: gene Location: 4643-5374 bp Ori: CGZ58230.1 Feature: domain Description: Inovirus_Gp2 Location: 4688-5342 bp Feature: domain Description: Inovirus_Gp2 Location: 4688-5342 bp Feature: gene Location: 6199-7431 bp Ori: CGZ58250.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6400-7054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6400-7054 bp Feature: domain Description: GIIM Note: maturase Location: 7132-7354 bp Feature: domain Description: GIIM Note: maturase Location: 71 32-7354 bp Feature: gene Location: 7893-9332 bp Ori: CGZ58295.1 Feature: domain Description: LZ_Tnp_IS66 Location: 8031-8256 bp Feature: domain Description: LZ_Tnp_IS66 Location: 8031 -8256 bp Feature: domain Description: zf-IS66 Location: 8277-8409 bp Feature: domain Description: zf-IS66 Location: 8277-8409 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8454-9291 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8454-9291 bp Feature: gene Location: 9352-9699 bp Ori: CGZ58350.1 Feature: domain Description: TnpB_IS66 Location: 9379-9670 bp Feature: domain Description: TnpB_IS66 Location: 9379-9670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), Inovirus_Gp2 (pfam11726), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: CIZQ01000032.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 10492_1#4, scaffold ERS326221SCcontig000032, whole genome shotgun sequence (51093 bp)
Overview 1 RT 1: 38161-43433 bp Neighborhood of RT #1 [38161, 43450] type_I_sec_LssB type_I_hlyD type_I_hlyD RVT-UG11 PRK09678 Feature: gene Location: 38161-40341 bp Ori: CHA79952.1 Gene: apxIB_2 Feature: domain Description: type_I_sec_LssB Location: 38221-40294 bp Feature: domain Description: type_I_sec_LssB Location: 382 2 1-402 94 bp Feature: gene Location: 40322-41512 bp Ori: CHA79981.1 Gene: prsE_2 Feature: domain Description: type_I_hlyD Location: 40403-40847 bp Feature: domain Description: type_I_hlyD Location: 40403-40847 bp Feature: domain Description: type_I_hlyD Location: 40886-41510 bp Feature: domain Description: type_I_hlyD Location: 40886-41510 bp Feature: gene Location: 42055-42828 bp Ori: CHA80040.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 42190-42643 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 42 190-42 643 bp Feature: gene Location: 42797-42970 bp Feature: gene Location: 43232-43450 bp Ori: CHA80109.1 Gene: ogr Feature: domain Description: PRK09678 Location: 43235-43433 bp Feature: domain Description: PRK09678 Location: 432 35-43433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_sec_LssB (TIGR03375), type_I_hlyD (TIGR01843), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional)