myRT

myRT report for GCA_001149785.1_6983_3_70

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Seq: CLVO01000005.1 Streptococcus pneumoniae genome assembly 6983_3#70, scaffold ERS021787SCcontig000005, whole genome shotgun sequence (75612 bp)
Overview 1 RT 1: 27586-36843 bp Neighborhood of RT #1 [27586, 37025] COG5340 AbiEii RVT-GII KOG4768 cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Feature: gene Location: 27586-28176 bp Feature: domain Description: COG5340 Location: 27589-28021 bp Feature: domain Description: COG5340 Location: 27589-28021 bp Feature: gene Location: 28173-29018 bp Feature: domain Description: AbiEii Location: 28272-28971 bp Feature: domain Description: AbiEii Location: 28272-28971 bp Feature: gene Location: 29368-31290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29695-30430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29695-30430 bp Feature: domain Description: KOG4768 Location: 30577-30682 bp Feature: domain Description: KOG4768 Location: 30577-30682 bp Feature: domain Description: cas_Csn1 Location: 30838-31120 bp Feature: domain Description: cas_Csn1 Location: 30838-31 1 20 bp Feature: gene Location: 31999-34677 bp Feature: domain Description: Peptidase_M23 Location: 33445-33649 bp Feature: domain Description: Peptidase_M23 Location: 33445-33649 bp Feature: domain Description: Phage_lysozyme2 Location: 33802-34312 bp Feature: domain Description: Phage_lysozyme2 Location: 33802-3431 2 bp Feature: domain Description: COG3942 Location: 34387-34660 bp Feature: domain Description: COG3942 Location: 34387-34660 bp Feature: gene Location: 34674-37025 bp Feature: domain Description: TraC-F-type Location: 35460-36843 bp Feature: domain Description: TraC-F-type Location: 35460-36843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746)

Seq: CLVO01000012.1 Streptococcus pneumoniae genome assembly 6983_3#70, scaffold ERS021787SCcontig000012, whole genome shotgun sequence (62082 bp)
Overview 1 RT 1: 47003-54916 bp Neighborhood of RT #1 [47003, 54921] PRK04813 MFS_MefA_like RVT-GII GIIM GlpF Feature: gene Location: 47003-48553 bp Feature: domain Description: PRK04813 Location: 47021-48548 bp Feature: domain Description: PRK04813 Location: 4702 1-48548 bp Feature: gene Location: 49019-50197 bp Feature: domain Description: MFS_MefA_like Location: 49034-50177 bp Feature: domain Description: MFS_MefA_like Location: 49034-50177 bp Feature: gene Location: 50657-51934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50861-51476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50861-51476 bp Feature: domain Description: GIIM Note: maturase Location: 51530-51743 bp Feature: domain Description: GIIM Note: maturase Location: 51530-51743 bp Feature: gene Location: 52971-53630 bp Feature: gene Location: 54217-54921 bp Feature: domain Description: GlpF Location: 54220-54916 bp Feature: domain Description: GlpF Location: 542 2 0-54916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK04813 (D-alanine--poly(phosphoribitol) ligase subunit DltA), MFS_MefA_like (cd06173), RVT-GII, GIIM (pfam08388), GlpF (COG0580)