myRT

myRT report for GCA_001150985.1_5139_2_3

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Seq: CQDR01000005.1 Yersinia pseudotuberculosis genome assembly 5139_2#3, scaffold ERS008474SCcontig000005, whole genome shotgun sequence (210520 bp)
Overview 1 RT 1: 37228-43938 bp 2 RT 2: 49891-55509 bp Neighborhood of RT #1 [37228, 43958] PRK09692 RVT-Retrons Shufflon_N TraD Neighborhood of RT #2 [49891, 55509] RepL RVT-UG12 Feature: gene Location: 37228-38457 bp Ori: CNK15877.1 Gene: intA_1 Feature: domain Description: PRK09692 Location: 37231-38446 bp Feature: domain Description: PRK09692 Location: 37231 -38446 bp Feature: gene Location: 38537-39637 bp Feature: gene Location: 39790-41511 bp Ori: CNK15925.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39928-40552 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39928-40552 bp Feature: gene Location: 42177-43493 bp Ori: CNK15949.1 Feature: domain Description: Shufflon_N Location: 42321-43257 bp Feature: domain Description: Shufflon_N Location: 42321 -43257 bp Feature: gene Location: 43683-43958 bp Ori: CNK15973.1 Feature: domain Description: TraD Location: 43761-43938 bp Feature: domain Description: TraD Location: 43761 -43938 bp Feature: gene Location: 49891-50397 bp Ori: CNK16158.1 Feature: domain Description: RepL Location: 50026-50353 bp Feature: domain Description: RepL Location: 50026-50353 bp Feature: gene Location: 50722-51654 bp Feature: gene Location: 51897-53453 bp Ori: CNK16200.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 52248-52683 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 52248-52683 bp Feature: gene Location: 54000-54782 bp Feature: gene Location: 55195-55509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-Retrons, Shufflon_N (pfam04917), TraD (pfam06412), RepL (pfam05732), RVT-UG12