myRT

myRT report for GCA_001161325.1_6823_4_20

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Seq: CKVR01000079.1 Streptococcus pneumoniae genome assembly 6823_4#20, scaffold ERS021450SCcontig000079, whole genome shotgun sequence (24082 bp)
Overview 1 RT 1: 13415-22267 bp Neighborhood of RT #1 [13415, 22446] TraG-D_C Ftsk_gamma Ftsk_gamma RVT_N RVT-GII GIIM nuc_hydro rpsA Feature: gene Location: 13415-13801 bp Feature: gene Location: 13819-17319 bp Feature: domain Description: TraG-D_C Location: 15436-15796 bp Feature: domain Description: TraG-D_C Location: 1 5436-1 5796 bp Feature: domain Description: Ftsk_gamma Location: 16204-16381 bp Feature: domain Description: Ftsk_gamma Location: 1 6204-1 6381 bp Feature: domain Description: Ftsk_gamma Location: 16513-16648 bp Feature: domain Description: Ftsk_gamma Location: 1 651 3-1 6648 bp Feature: gene Location: 17532-19178 bp Feature: RT Description: RVT_N Location: 17574-17811 bp Feature: RT Description: RVT_N Location: 1 7574-1 781 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17865-18525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7865-1 8525 bp Feature: domain Description: GIIM Note: maturase Location: 18594-18825 bp Feature: domain Description: GIIM Note: maturase Location: 1 8594-1 8825 bp Feature: gene Location: 19898-20848 bp Feature: domain Description: nuc_hydro Location: 19913-20819 bp Feature: domain Description: nuc_hydro Location: 1 991 3-2081 9 bp Feature: gene Location: 21463-22446 bp Feature: domain Description: rpsA Location: 21730-22267 bp Feature: domain Description: rpsA Location: 21 730-22267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), Ftsk_gamma (smart00843), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), nuc_hydro (cl00226), rpsA (TIGR00717)

Seq: CKVR01000023.1 Streptococcus pneumoniae genome assembly 6823_4#20, scaffold ERS021450SCcontig000023, whole genome shotgun sequence (44488 bp)
Overview 1 RT 1: 15440-24786 bp Neighborhood of RT #1 [15440, 24786] caa3_CtaG amiF RVT-GII HNHc TraC-F-type Feature: gene Location: 15440-16345 bp Feature: domain Description: caa3_CtaG Location: 15449-16289 bp Feature: domain Description: caa3_CtaG Location: 15449-162 89 bp Feature: gene Location: 16579-16968 bp Feature: domain Description: amiF Location: 16582-16954 bp Feature: domain Description: amiF Location: 16582 -16954 bp Feature: gene Location: 17684-19516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17984-18689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17984-18689 bp Feature: domain Description: HNHc Note: nucleases Location: 19268-19400 bp Feature: domain Description: HNHc Note: nucleases Location: 192 68-19400 bp Feature: gene Location: 19927-20775 bp Feature: domain Description: TraC-F-type Location: 20068-20614 bp Feature: domain Description: TraC-F-type Location: 2 0068-2 0614 bp Feature: gene Location: 20806-24786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT caa3_CtaG (TIGR02737), amiF (PRK13287), RVT-GII, HNHc (smart00507), TraC-F-type (TIGR02746)

Seq: CKVR01000041.1 Streptococcus pneumoniae genome assembly 6823_4#20, scaffold ERS021450SCcontig000041, whole genome shotgun sequence (34570 bp)
Overview 1 RT 1: 1201-6775 bp 2 RT 2: 12233-18413 bp Neighborhood of RT #1 [1201, 6775] COG4712 RVT-GII beta_clamp Neighborhood of RT #2 [12233, 18413] NT_KNTase_like RVT-GII PRK06850 Feature: gene Location: 1201-1596 bp Feature: gene Location: 1619-1975 bp Feature: domain Description: COG4712 Location: 1628-1970 bp Feature: domain Description: COG4712 Location: 1628-1970 bp Feature: gene Location: 2734-4635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3052-3754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 052-3 754 bp Feature: gene Location: 5321-6433 bp Feature: domain Description: beta_clamp Location: 5324-6428 bp Feature: domain Description: beta_clamp Location: 53 24-6428 bp Feature: gene Location: 6446-6775 bp Feature: gene Location: 12233-12604 bp Feature: gene Location: 12626-13024 bp Feature: domain Description: NT_KNTase_like Location: 12701-13001 bp Feature: domain Description: NT_KNTase_like Location: 12701-13 001 bp Feature: gene Location: 13783-15714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14104-14839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14104-1483 9 bp Feature: gene Location: 16428-18200 bp Feature: domain Description: PRK06850 Location: 16443-17670 bp Feature: domain Description: PRK06850 Location: 16443 -17670 bp Feature: gene Location: 18279-18413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4712 (Uncharacterized protein ), RVT-GII, beta_clamp (cl29549), NT_KNTase_like (cd05403), PRK06850 (hypothetical protein; Provisional)