myRT

myRT report for GCA_001161545.1_8616_4_42

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Seq: CJRQ01000003.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 8616_4#42, scaffold ERS168218SCcontig000003, whole genome shotgun sequence (295954 bp)
Overview 1 RT 1: 38126-43398 bp Neighborhood of RT #1 [38126, 43415] type_I_sec_LssB type_I_hlyD type_I_hlyD RVT-UG11 PRK09678 Feature: gene Location: 38126-40306 bp Ori: CIC71199.1 Gene: apxIB_1 Feature: domain Description: type_I_sec_LssB Location: 38186-40259 bp Feature: domain Description: type_I_sec_LssB Location: 381 86-40259 bp Feature: gene Location: 40287-41477 bp Ori: CIC71226.1 Gene: prsE_1 Feature: domain Description: type_I_hlyD Location: 40368-40812 bp Feature: domain Description: type_I_hlyD Location: 40368-4081 2 bp Feature: domain Description: type_I_hlyD Location: 40851-41475 bp Feature: domain Description: type_I_hlyD Location: 40851 -41 475 bp Feature: gene Location: 42020-42793 bp Ori: CIC71276.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 42155-42608 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 421 55-42608 bp Feature: gene Location: 42762-42935 bp Feature: gene Location: 43197-43415 bp Ori: CIC71344.1 Gene: ogr Feature: domain Description: PRK09678 Location: 43200-43398 bp Feature: domain Description: PRK09678 Location: 43200-43398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT type_I_sec_LssB (TIGR03375), type_I_hlyD (TIGR01843), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: CJRQ01000004.1 Salmonella enterica subsp. enterica serovar Typhi genome assembly 8616_4#42, scaffold ERS168218SCcontig000004, whole genome shotgun sequence (261408 bp)
Overview 1 RT 1: 3464-9574 bp Neighborhood of RT #1 [3464, 9603] Mrr_cat Inovirus_Gp2 RVT-GII RT_Bac_retron_I GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 3464-4324 bp Ori: CIC80433.1 Feature: domain Description: Mrr_cat Location: 3899-4208 bp Feature: domain Description: Mrr_cat Location: 3899-42 08 bp Feature: gene Location: 4652-5383 bp Ori: CIC80464.1 Feature: domain Description: Inovirus_Gp2 Location: 4697-5351 bp Feature: domain Description: Inovirus_Gp2 Location: 4697-5351 bp Feature: gene Location: 6208-7335 bp Ori: CIC80498.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6409-6796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6409-6796 bp Feature: domain Description: RT_Bac_retron_I Location: 6796-6970 bp Feature: domain Description: RT_Bac_retron_I Location: 6796-6970 bp Feature: domain Description: GIIM Note: maturase Location: 7036-7261 bp Feature: domain Description: GIIM Note: maturase Location: 7036-72 61 bp Feature: gene Location: 7797-9236 bp Ori: CIC80522.1 Feature: domain Description: LZ_Tnp_IS66 Location: 7935-8160 bp Feature: domain Description: LZ_Tnp_IS66 Location: 7935-8160 bp Feature: domain Description: zf-IS66 Location: 8181-8313 bp Feature: domain Description: zf-IS66 Location: 8181-8313 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8358-9195 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8358-9195 bp Feature: gene Location: 9256-9603 bp Ori: CIC80548.1 Feature: domain Description: TnpB_IS66 Location: 9283-9574 bp Feature: domain Description: TnpB_IS66 Location: 92 83-9574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mrr_cat (pfam04471), Inovirus_Gp2 (pfam11726), RVT-GII, RT_Bac_retron_I (cd01646), GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)