myRT

myRT report for GCA_001161985.1_6805_6_4

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Seq: CRVC01000027.1 Streptococcus pneumoniae genome assembly 6805_6#4, scaffold ERS021218SCcontig000027, whole genome shotgun sequence (32002 bp)
Overview 1 RT 1: 24538-29794 bp Neighborhood of RT #1 [24538, 29796] antibiot_sagB RVT-GII GIIM LuxS COG4868 Feature: gene Location: 24538-25308 bp Feature: domain Description: antibiot_sagB Location: 24796-25285 bp Feature: domain Description: antibiot_sagB Location: 24796-25285 bp Feature: gene Location: 25328-25492 bp Feature: gene Location: 26391-27569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26595-27210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26595-2721 0 bp Feature: domain Description: GIIM Note: maturase Location: 27264-27477 bp Feature: domain Description: GIIM Note: maturase Location: 27264-27477 bp Feature: gene Location: 27735-28217 bp Feature: domain Description: LuxS Location: 27753-28212 bp Feature: domain Description: LuxS Location: 27753-2821 2 bp Feature: gene Location: 28312-29796 bp Feature: domain Description: COG4868 Location: 28318-29794 bp Feature: domain Description: COG4868 Location: 2831 8-29794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT antibiot_sagB (TIGR03605), RVT-GII, GIIM (pfam08388), LuxS (pfam02664), COG4868 (Uncharacterized protein, UPF0371 family )

Seq: CRVC01000019.1 Streptococcus pneumoniae genome assembly 6805_6#4, scaffold ERS021218SCcontig000019, whole genome shotgun sequence (47029 bp)
Overview 1 RT 1: 13535-22819 bp Neighborhood of RT #1 [13535, 22974] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII cas_Csn1 AbiEii COG5340 Feature: gene Location: 13535-15886 bp Feature: domain Description: TraC-F-type Location: 14321-15704 bp Feature: domain Description: TraC-F-type Location: 1432 1-15704 bp Feature: gene Location: 15883-18561 bp Feature: domain Description: Peptidase_M23 Location: 17329-17533 bp Feature: domain Description: Peptidase_M2 3 Location: 1732 9-17533 bp Feature: domain Description: Phage_lysozyme2 Location: 17686-18193 bp Feature: domain Description: Phage_lysozyme2 Location: 17686-18193 bp Feature: domain Description: COG3942 Location: 18313-18544 bp Feature: domain Description: COG3942 Location: 18313-18544 bp Feature: gene Location: 19270-21192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19597-20332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19597-2 0332 bp Feature: domain Description: cas_Csn1 Location: 20743-21022 bp Feature: domain Description: cas_Csn1 Location: 2 0743-2 102 2 bp Feature: gene Location: 21542-22387 bp Feature: domain Description: AbiEii Location: 21641-22340 bp Feature: domain Description: AbiEii Location: 2 1641-2 2 340 bp Feature: gene Location: 22384-22974 bp Feature: domain Description: COG5340 Location: 22387-22819 bp Feature: domain Description: COG5340 Location: 2 2 387-2 2 819 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, cas_Csn1 (TIGR01865), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system )