myRT

myRT report for GCA_001162985.1_6972_5_20

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Seq: CLTY01000024.1 Streptococcus pneumoniae genome assembly 6972_5#20, scaffold ERS022146SCcontig000024, whole genome shotgun sequence (37748 bp)
Overview 1 RT 1: 13670-22927 bp Neighborhood of RT #1 [13670, 23109] COG5340 AbiEii RVT-GII cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Feature: gene Location: 13670-14260 bp Feature: domain Description: COG5340 Location: 13673-14105 bp Feature: domain Description: COG5340 Location: 1 3673-1 41 05 bp Feature: gene Location: 14257-15102 bp Feature: domain Description: AbiEii Location: 14356-15055 bp Feature: domain Description: AbiEii Location: 1 4356-1 5055 bp Feature: gene Location: 15452-17374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15779-16514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5779-1 651 4 bp Feature: domain Description: cas_Csn1 Location: 16925-17204 bp Feature: domain Description: cas_Csn1 Location: 1 6925-1 7204 bp Feature: gene Location: 18083-20761 bp Feature: domain Description: Peptidase_M23 Location: 19529-19733 bp Feature: domain Description: Peptidase_M23 Location: 1 9529-1 9733 bp Feature: domain Description: Phage_lysozyme2 Location: 19886-20393 bp Feature: domain Description: Phage_lysozyme2 Location: 1 9886-20393 bp Feature: domain Description: COG3942 Location: 20513-20744 bp Feature: domain Description: COG3942 Location: 2051 3-20744 bp Feature: gene Location: 20758-23109 bp Feature: domain Description: TraC-F-type Location: 21544-22927 bp Feature: domain Description: TraC-F-type Location: 21 544-22927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746)

Seq: CLTY01000007.1 Streptococcus pneumoniae genome assembly 6972_5#20, scaffold ERS022146SCcontig000007, whole genome shotgun sequence (90041 bp)
Overview 1 RT 1: 2207-7442 bp Neighborhood of RT #1 [2207, 7465] COG4868 LuxS RVT-GII GIIM antibiot_sagB Feature: gene Location: 2207-3691 bp Feature: domain Description: COG4868 Location: 2213-3689 bp Feature: domain Description: COG4868 Location: 2 2 13-3689 bp Feature: gene Location: 3786-4268 bp Feature: domain Description: LuxS Location: 3804-4263 bp Feature: domain Description: LuxS Location: 3804-42 63 bp Feature: gene Location: 4434-5612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4638-5253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4638-52 53 bp Feature: domain Description: GIIM Note: maturase Location: 5307-5520 bp Feature: domain Description: GIIM Note: maturase Location: 5307-552 0 bp Feature: gene Location: 6511-6675 bp Feature: gene Location: 6695-7465 bp Feature: domain Description: antibiot_sagB Location: 6953-7442 bp Feature: domain Description: antibiot_sagB Location: 6953-7442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4868 (Uncharacterized protein, UPF0371 family ), LuxS (pfam02664), RVT-GII, GIIM (pfam08388), antibiot_sagB (TIGR03605)