myRT

myRT report for GCA_001164305.1_5756_5_6

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Seq: CMVS01000007.1 Streptococcus pneumoniae genome assembly 5756_5#6, scaffold ERS096051SCcontig000007, whole genome shotgun sequence (62473 bp)
Overview 1 RT 1: 19800-25071 bp Neighborhood of RT #1 [19800, 25076] COG4868 LuxS RVT-GII GIIM rplA rplK Feature: gene Location: 19800-21284 bp Feature: domain Description: COG4868 Location: 19806-21282 bp Feature: domain Description: COG4868 Location: 1 9806-21 282 bp Feature: gene Location: 21379-21861 bp Feature: domain Description: LuxS Location: 21397-21856 bp Feature: domain Description: LuxS Location: 21 397-21 856 bp Feature: gene Location: 22027-23205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22231-22846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22231 -22846 bp Feature: domain Description: GIIM Note: maturase Location: 22900-23113 bp Feature: domain Description: GIIM Note: maturase Location: 22900-231 1 3 bp Feature: gene Location: 23754-24443 bp Feature: domain Description: rplA Location: 23760-24438 bp Feature: domain Description: rplA Location: 23760-24438 bp Feature: gene Location: 24651-25076 bp Feature: domain Description: rplK Location: 24654-25071 bp Feature: domain Description: rplK Location: 24654-25071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4868 (Uncharacterized protein, UPF0371 family ), LuxS (pfam02664), RVT-GII, GIIM (pfam08388), rplA (PRK05424), rplK (PRK00140)

Seq: CMVS01000019.1 Streptococcus pneumoniae genome assembly 5756_5#6, scaffold ERS096051SCcontig000019, whole genome shotgun sequence (33479 bp)
Overview 1 RT 1: 15107-24364 bp Neighborhood of RT #1 [15107, 24546] COG5340 AbiEii RVT-GII KOG4768 cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Feature: gene Location: 15107-15697 bp Feature: domain Description: COG5340 Location: 15110-15542 bp Feature: domain Description: COG5340 Location: 15110-15542 bp Feature: gene Location: 15694-16539 bp Feature: domain Description: AbiEii Location: 15793-16492 bp Feature: domain Description: AbiEii Location: 15793-16492 bp Feature: gene Location: 16889-18811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17216-17951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172 16-17951 bp Feature: domain Description: KOG4768 Location: 18098-18203 bp Feature: domain Description: KOG4768 Location: 18098-182 03 bp Feature: domain Description: cas_Csn1 Location: 18362-18641 bp Feature: domain Description: cas_Csn1 Location: 18362 -18641 bp Feature: gene Location: 19520-22198 bp Feature: domain Description: Peptidase_M23 Location: 20966-21170 bp Feature: domain Description: Peptidase_M2 3 Location: 2 0966-2 1170 bp Feature: domain Description: Phage_lysozyme2 Location: 21323-21833 bp Feature: domain Description: Phage_lysozyme2 Location: 2 132 3-2 1833 bp Feature: domain Description: COG3942 Location: 21908-22181 bp Feature: domain Description: COG3942 Location: 2 1908-2 2 181 bp Feature: gene Location: 22195-24546 bp Feature: domain Description: TraC-F-type Location: 22981-24364 bp Feature: domain Description: TraC-F-type Location: 2 2 981-2 4364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746)