myRT

myRT report for GCA_001165105.1_6753_2_22

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Seq: CRJO01000018.1 Streptococcus pneumoniae genome assembly 6753_2#22, scaffold ERS021021SCcontig000018, whole genome shotgun sequence (51846 bp)
Overview 1 RT 1: 16645-23538 bp Neighborhood of RT #1 [16645, 23693] Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII KOG4768 cas_Csn1 AbiEii COG5340 Feature: gene Location: 16645-19323 bp Feature: domain Description: Peptidase_M23 Location: 18091-18295 bp Feature: domain Description: Peptidase_M23 Location: 1 8091 -1 8295 bp Feature: domain Description: Phage_lysozyme2 Location: 18448-18955 bp Feature: domain Description: Phage_lysozyme2 Location: 1 8448-1 8955 bp Feature: domain Description: COG3942 Location: 19075-19306 bp Feature: domain Description: COG3942 Location: 1 9075-1 9306 bp Feature: gene Location: 20032-20205 bp Feature: gene Location: 20358-21911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20361-21051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20361 -21 051 bp Feature: domain Description: KOG4768 Location: 21198-21303 bp Feature: domain Description: KOG4768 Location: 21 1 98-21 303 bp Feature: domain Description: cas_Csn1 Location: 21462-21741 bp Feature: domain Description: cas_Csn1 Location: 21 462-21 741 bp Feature: gene Location: 22261-23106 bp Feature: domain Description: AbiEii Location: 22360-23059 bp Feature: domain Description: AbiEii Location: 22360-23059 bp Feature: gene Location: 23103-23693 bp Feature: domain Description: COG5340 Location: 23106-23538 bp Feature: domain Description: COG5340 Location: 231 06-23538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), cas_Csn1 (TIGR01865), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system )

Seq: CRJO01000038.1 Streptococcus pneumoniae genome assembly 6753_2#22, scaffold ERS021021SCcontig000038, whole genome shotgun sequence (6413 bp)
Overview 1 RT 1: 805-4208 bp Neighborhood of RT #1 [805, 4210] RVT-GII GIIM LuxS COG4868 Feature: gene Location: 805-1983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1009-1624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1009-162 4 bp Feature: domain Description: GIIM Note: maturase Location: 1678-1891 bp Feature: domain Description: GIIM Note: maturase Location: 1678-1891 bp Feature: gene Location: 2149-2631 bp Feature: domain Description: LuxS Location: 2167-2626 bp Feature: domain Description: LuxS Location: 2 167-2 62 6 bp Feature: gene Location: 2726-4210 bp Feature: domain Description: COG4868 Location: 2732-4208 bp Feature: domain Description: COG4868 Location: 2 732 -42 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LuxS (pfam02664), COG4868 (Uncharacterized protein, UPF0371 family ), RVT-GII, GIIM (pfam08388)