myRT

myRT report for GCA_001170645.1_6730_7_13

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Seq: CRAN01000002.1 Streptococcus pneumoniae genome assembly 6730_7#13, scaffold ERS020219SCcontig000002, whole genome shotgun sequence (152746 bp)
Overview 1 RT 1: 8631-15254 bp 2 RT 2: 28803-38087 bp Neighborhood of RT #1 [8631, 15259] RVT-GII RVT-GII GIIM MFS_MefA_like PRK04813 Neighborhood of RT #2 [28803, 38242] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII cas_Csn1 AbiEii COG5340 Feature: gene Location: 8631-9218 bp Feature: gene Location: 9372-9569 bp Feature: gene Location: 10332-10613 bp Ori: COC90716.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10536-10608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0536-1 0608 bp Feature: gene Location: 10617-11609 bp Ori: COC90729.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10620-11151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0620-1 1 1 51 bp Feature: domain Description: GIIM Note: maturase Location: 11205-11418 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 205-1 1 41 8 bp Feature: gene Location: 12065-13243 bp Ori: COC90756.1 Feature: domain Description: MFS_MefA_like Location: 12080-13223 bp Feature: domain Description: MFS_MefA_like Location: 1 2080-1 3223 bp Feature: gene Location: 13709-15259 bp Ori: COC90775.1 Gene: dltA Feature: domain Description: PRK04813 Location: 13727-15254 bp Feature: domain Description: PRK0481 3 Location: 1 3727-1 5254 bp Feature: gene Location: 28803-31154 bp Ori: COC91378.1 Feature: domain Description: TraC-F-type Location: 29589-30972 bp Feature: domain Description: TraC-F-type Location: 29589-30972 bp Feature: gene Location: 31151-33829 bp Ori: COC91405.1 Feature: domain Description: Peptidase_M23 Location: 32597-32801 bp Feature: domain Description: Peptidase_M23 Location: 32597-32801 bp Feature: domain Description: Phage_lysozyme2 Location: 32954-33461 bp Feature: domain Description: Phage_lysozyme2 Location: 32954-33461 bp Feature: domain Description: COG3942 Location: 33581-33812 bp Feature: domain Description: COG3942 Location: 33581 -3381 2 bp Feature: gene Location: 34538-36460 bp Ori: COC91432.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34865-35600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34865-35600 bp Feature: domain Description: cas_Csn1 Location: 36011-36290 bp Feature: domain Description: cas_Csn1 Location: 3601 1 -36290 bp Feature: gene Location: 36810-37655 bp Ori: COC91463.1 Gene: abiGII Feature: domain Description: AbiEii Location: 36909-37608 bp Feature: domain Description: AbiEii Location: 36909-37608 bp Feature: gene Location: 37652-38242 bp Ori: COC91491.1 Feature: domain Description: COG5340 Location: 37655-38087 bp Feature: domain Description: COG5340 Location: 37655-38087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MFS_MefA_like (cd06173), PRK04813 (D-alanine--poly(phosphoribitol) ligase subunit DltA), TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), cas_Csn1 (TIGR01865), AbiEii (pfam08843)
COG5340 (Transcriptional regulator, predicted component of viral defense system )