myRT

myRT report for GCA_001171625.1_5737_2_3

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Seq: CMTH01000026.1 Streptococcus pneumoniae genome assembly 5737_2#3, scaffold ERS096096SCcontig000026, whole genome shotgun sequence (30788 bp)
Overview 1 RT 1: 2196-9502 bp Neighborhood of RT #1 [2196, 9507] COG4868 LuxS RVT-GII GIIM xerS EriC TrkA_C Feature: gene Location: 2196-3680 bp Feature: domain Description: COG4868 Location: 2202-3678 bp Feature: domain Description: COG4868 Location: 2202-3678 bp Feature: gene Location: 3775-4257 bp Feature: domain Description: LuxS Location: 3793-4252 bp Feature: domain Description: LuxS Location: 3793-4252 bp Feature: gene Location: 4423-5601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4627-5242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4627-5242 bp Feature: domain Description: GIIM Note: maturase Location: 5296-5509 bp Feature: domain Description: GIIM Note: maturase Location: 5296-5509 bp Feature: gene Location: 6303-7373 bp Feature: domain Description: xerS Location: 6306-7371 bp Feature: domain Description: xerS Location: 6306-7371 bp Feature: gene Location: 7957-9507 bp Feature: domain Description: EriC Location: 8050-9262 bp Feature: domain Description: EriC Location: 8050-9262 bp Feature: domain Description: TrkA_C Location: 9307-9502 bp Feature: domain Description: TrkA_C Location: 9307-9502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4868 (Uncharacterized protein, UPF0371 family ), LuxS (pfam02664), RVT-GII, GIIM (pfam08388), xerS (PRK05084), EriC (cd01031), TrkA_C (pfam02080)

Seq: CMTH01000036.1 Streptococcus pneumoniae genome assembly 5737_2#3, scaffold ERS096096SCcontig000036, whole genome shotgun sequence (17943 bp)
Overview 1 RT 1: 13513-17047 bp Neighborhood of RT #1 [13513, 17217] COG5340 AbiEii RVT-GII cas_Csn1 Feature: gene Location: 13513-14103 bp Feature: domain Description: COG5340 Location: 13516-13948 bp Feature: domain Description: COG5340 Location: 13516-13948 bp Feature: gene Location: 14100-14945 bp Feature: domain Description: AbiEii Location: 14199-14898 bp Feature: domain Description: AbiEii Location: 14199-14898 bp Feature: gene Location: 15295-17217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15622-16357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1562 2 -16357 bp Feature: domain Description: cas_Csn1 Location: 16768-17047 bp Feature: domain Description: cas_Csn1 Location: 16768-17047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, cas_Csn1 (TIGR01865)