myRT

myRT report for GCA_001172565.1_5750_2_12

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Seq: CMVF01000002.1 Streptococcus pneumoniae genome assembly 5750_2#12, scaffold ERS096045SCcontig000002, whole genome shotgun sequence (123191 bp)
Overview 1 RT 1: 13481-22738 bp Neighborhood of RT #1 [13481, 22920] COG5340 AbiEii RVT-GII KOG4768 cas_Csn1 Peptidase_M23 Phage_lysozyme2 COG3942 TraC-F-type Feature: gene Location: 13481-14071 bp Feature: domain Description: COG5340 Location: 13484-13916 bp Feature: domain Description: COG5340 Location: 1 3484-1 391 6 bp Feature: gene Location: 14068-14913 bp Feature: domain Description: AbiEii Location: 14167-14866 bp Feature: domain Description: AbiEii Location: 1 41 67-1 4866 bp Feature: gene Location: 15263-17185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15590-16325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5590-1 6325 bp Feature: domain Description: KOG4768 Location: 16472-16577 bp Feature: domain Description: KOG4768 Location: 1 6472-1 6577 bp Feature: domain Description: cas_Csn1 Location: 16736-17015 bp Feature: domain Description: cas_Csn1 Location: 1 6736-1 701 5 bp Feature: gene Location: 17894-20572 bp Feature: domain Description: Peptidase_M23 Location: 19340-19544 bp Feature: domain Description: Peptidase_M23 Location: 1 9340-1 9544 bp Feature: domain Description: Phage_lysozyme2 Location: 19697-20207 bp Feature: domain Description: Phage_lysozyme2 Location: 1 9697-20207 bp Feature: domain Description: COG3942 Location: 20282-20555 bp Feature: domain Description: COG3942 Location: 20282-20555 bp Feature: gene Location: 20569-22920 bp Feature: domain Description: TraC-F-type Location: 21355-22738 bp Feature: domain Description: TraC-F-type Location: 21 355-22738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), cas_Csn1 (TIGR01865), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), TraC-F-type (TIGR02746)