myRT

myRT report for GCA_001173885.1_5919_1_6

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Seq: CMWS01000032.1 Streptococcus pneumoniae genome assembly 5919_1#6, scaffold ERS095991SCcontig000032, whole genome shotgun sequence (25934 bp)
Overview 1 RT 1: 727-4276 bp Neighborhood of RT #1 [727, 4431] RVT-GII cas_Csn1 AbiEii COG5340 Feature: gene Location: 727-2649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 054-1 789 bp Feature: domain Description: cas_Csn1 Location: 2200-2479 bp Feature: domain Description: cas_Csn1 Location: 2200-2479 bp Feature: gene Location: 2999-3844 bp Feature: domain Description: AbiEii Location: 3098-3797 bp Feature: domain Description: AbiEii Location: 3098-3797 bp Feature: gene Location: 3841-4431 bp Feature: domain Description: COG5340 Location: 3844-4276 bp Feature: domain Description: COG5340 Location: 3844-4276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system ), RVT-GII, cas_Csn1 (TIGR01865)

Seq: CMWS01000001.1 Streptococcus pneumoniae genome assembly 5919_1#6, scaffold ERS095991SCcontig000001, whole genome shotgun sequence (112932 bp)
Overview 1 RT 1: 84278-91649 bp Neighborhood of RT #1 [84278, 91654] AceF lipoamide_DH Lip_prot_lig_C RVT-GII GIIM xerS EriC TrkA_C Feature: gene Location: 84278-85981 bp Feature: domain Description: AceF Location: 84281-84578 bp Feature: domain Description: AceF Location: 842 81-84578 bp Feature: domain Description: lipoamide_DH Location: 84614-85964 bp Feature: domain Description: lipoamide_DH Location: 84614-85964 bp Feature: gene Location: 86052-86405 bp Feature: domain Description: Lip_prot_lig_C Location: 86145-86391 bp Feature: domain Description: Lip_prot_lig_C Location: 86145-86391 bp Feature: gene Location: 86570-87748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86774-87389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86774-87389 bp Feature: domain Description: GIIM Note: maturase Location: 87443-87656 bp Feature: domain Description: GIIM Note: maturase Location: 87443-87656 bp Feature: gene Location: 88450-89520 bp Feature: domain Description: xerS Location: 88453-89518 bp Feature: domain Description: xerS Location: 88453-89518 bp Feature: gene Location: 90104-91654 bp Feature: domain Description: EriC Location: 90197-91409 bp Feature: domain Description: EriC Location: 90197-91409 bp Feature: domain Description: TrkA_C Location: 91454-91649 bp Feature: domain Description: TrkA_C Location: 91454-91649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AceF (COG0508), lipoamide_DH (TIGR01350), Lip_prot_lig_C (pfam10437), RVT-GII, GIIM (pfam08388), xerS (PRK05084), EriC (cd01031), TrkA_C (pfam02080)