myRT

myRT report for GCA_001177185.1_6903_6_3

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Seq: CWDE01000069.1 Streptococcus equi subsp. equi genome assembly 6903_6#3, scaffold ERS044360SCcontig000069, whole genome shotgun sequence (13845 bp)
Overview 1 RT 1: 2083-7622 bp Neighborhood of RT #1 [2083, 7622] HTH_XRE RVT-AbiK RimL Feature: gene Location: 2083-2358 bp Ori: CRV34473.1 Feature: domain Description: HTH_XRE Location: 2194-2326 bp Feature: domain Description: HTH_XRE Location: 21 94-2326 bp Feature: gene Location: 3581-3802 bp Feature: gene Location: 4376-6148 bp Ori: CRV34479.1 Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 4850-5240 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 4850-5240 bp Feature: gene Location: 6246-6773 bp Ori: CRV34482.1 Gene: ydaF_3 Feature: domain Description: RimL Location: 6267-6768 bp Feature: domain Description: RimL Location: 6267-6768 bp Feature: gene Location: 6966-7622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-AbiK, RimL (COG1670)

Seq: CWDE01000064.1 Streptococcus equi subsp. equi genome assembly 6903_6#3, scaffold ERS044360SCcontig000064, whole genome shotgun sequence (16855 bp)
Overview 1 RT 1: 611-13902 bp Neighborhood of RT #1 [611, 14036] COG2865 PHA03411 COG4646 COG4646 RVT-GII Intron_maturas2 HELICc SSB_OBF Feature: gene Location: 611-2038 bp Ori: CRV34193.1 Feature: domain Description: COG2865 Location: 614-2033 bp Feature: domain Description: COG2 865 Location: 614-2 033 bp Feature: gene Location: 2210-9052 bp Ori: CRV34197.1 Feature: domain Description: PHA03411 Location: 5792-6044 bp Feature: domain Description: PHA03411 Location: 5792 -6044 bp Feature: domain Description: COG4646 Location: 6359-7109 bp Feature: domain Description: COG4646 Location: 6359-7109 bp Feature: domain Description: COG4646 Location: 7379-8897 bp Feature: domain Description: COG4646 Location: 7379-8897 bp Feature: gene Location: 9550-11055 bp Ori: CRV34201.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9811-10603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9811-10603 bp Feature: domain Description: Intron_maturas2 Location: 10708-10939 bp Feature: domain Description: Intron_maturas2 Location: 10708-10939 bp Feature: gene Location: 11510-13333 bp Ori: CRV34205.1 Feature: domain Description: HELICc Location: 11537-11885 bp Feature: domain Description: HELICc Location: 11537-11885 bp Feature: gene Location: 13377-14036 bp Ori: CRV34208.1 Feature: domain Description: SSB_OBF Location: 13635-13902 bp Feature: domain Description: SSB_OBF Location: 13635-13902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HELICc (smart00490), SSB_OBF (cd04496)