myRT

myRT report for GCA_001180345.1_P1_London_28_IMP_1_04_05

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Seq: CVUY01000312.1 Pseudomonas aeruginosa genome assembly P1_London_28_IMP_1_04_05, contig P1_London_28_IMP_1_04_05_contig322, whole genome shotgun sequence (101843 bp)
Overview 1 RT 1: 2479-12784 bp 2 RT 2: 29042-37206 bp Neighborhood of RT #1 [2479, 12786] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [29042, 37220] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 2479-3600 bp Ori: CRQ39300.1 Feature: domain Description: COG3177 Location: 2497-3589 bp Feature: domain Description: COG31 77 Location: 2497-3589 bp Feature: gene Location: 3859-4020 bp Feature: gene Location: 4323-6008 bp Ori: CRQ39340.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 4380-4620 bp Feature: domain Description: RVT_N Location: 4380-4620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4668-5304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4668-5304 bp Feature: domain Description: GIIM Note: maturase Location: 5358-5589 bp Feature: domain Description: GIIM Note: maturase Location: 5358-5589 bp Feature: domain Description: HNH Note: nucleases Location: 5841-5979 bp Feature: domain Description: HNH Note: nucleases Location: 5841 -5979 bp Feature: gene Location: 7089-10826 bp Ori: CRQ39352.1 Gene: cph2_9 Feature: domain Description: PBP2_BvgS_HisK_like Location: 7197-7854 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 71 97-7854 bp Feature: domain Description: PRK09776 Location: 8067-8538 bp Feature: domain Description: PRK09776 Location: 8067-8538 bp Feature: domain Description: PAS Location: 8595-9120 bp Feature: domain Description: PAS Location: 8595-91 20 bp Feature: domain Description: PRK10060 Location: 9132-10776 bp Feature: domain Description: PRK1 0060 Location: 91 32-1 0776 bp Feature: gene Location: 10933-12786 bp Ori: CRQ39369.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 10945-12784 bp Feature: domain Description: PRK05658 Location: 1 0945-1 2784 bp Feature: gene Location: 29042-30334 bp Ori: CRQ39729.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 29132-30326 bp Feature: domain Description: PRK1 0770 Location: 291 32-30326 bp Feature: gene Location: 30315-33086 bp Ori: CRQ39744.1 Gene: lptD Feature: domain Description: LptD Location: 30510-33072 bp Feature: domain Description: LptD Location: 3051 0-33072 bp Feature: gene Location: 33219-34529 bp Ori: CRQ39763.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33222-33798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33222-33798 bp Feature: domain Description: YkfC Location: 34008-34161 bp Feature: domain Description: YkfC Location: 34008-341 61 bp Feature: domain Description: HNH Note: nucleases Location: 34335-34473 bp Feature: domain Description: HNH Note: nucleases Location: 34335-34473 bp Feature: gene Location: 35773-35907 bp Feature: gene Location: 36204-37220 bp Ori: CRQ39795.1 Feature: domain Description: COG3178 Location: 36207-37206 bp Feature: domain Description: COG31 78 Location: 36207-37206 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CVUY01000281.1 Pseudomonas aeruginosa genome assembly P1_London_28_IMP_1_04_05, contig P1_London_28_IMP_1_04_05_contig291, whole genome shotgun sequence (35977 bp)
Overview 1 RT 1: 1802-9113 bp Neighborhood of RT #1 [1802, 10168] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1802-2941 bp Ori: CRQ13764.1 Feature: domain Description: AAA_21 Location: 1874-1943 bp Feature: domain Description: AAA_2 1 Location: 1874-1943 bp Feature: domain Description: AAA_21 Location: 2417-2747 bp Feature: domain Description: AAA_2 1 Location: 2 417-2 747 bp Feature: gene Location: 2941-3498 bp Feature: gene Location: 3495-6515 bp Ori: CRQ13817.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3990-4461 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3990-4461 bp Feature: gene Location: 7430-8293 bp Ori: CRQ13841.1 Feature: domain Description: YeeA Location: 7454-8159 bp Feature: domain Description: YeeA Location: 7454-8159 bp Feature: gene Location: 8297-10168 bp Ori: CRQ13865.1 Feature: domain Description: DUF262 Location: 8345-9113 bp Feature: domain Description: DUF2 62 Location: 8345-9113 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CVUY01000166.1 Pseudomonas aeruginosa genome assembly P1_London_28_IMP_1_04_05, contig P1_London_28_IMP_1_04_05_contig166, whole genome shotgun sequence (81938 bp)
Overview 1 RT 1: 60059-65748 bp Neighborhood of RT #1 [60059, 65748] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 60059-60895 bp Ori: CRO92395.1 Feature: domain Description: HDOD Location: 60062-60890 bp Feature: domain Description: HDOD Location: 60062-60890 bp Feature: gene Location: 60996-61940 bp Ori: CRO92429.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 61005-61905 bp Feature: domain Description: YgfZ Location: 61005-61905 bp Feature: gene Location: 63663-64982 bp Ori: CRO92473.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63666-64242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 666-64242 bp Feature: domain Description: YkfC Location: 64440-64596 bp Feature: domain Description: YkfC Location: 64440-64596 bp Feature: domain Description: HNH Note: nucleases Location: 64779-64917 bp Feature: domain Description: HNH Note: nucleases Location: 64779-64917 bp Feature: gene Location: 65058-65312 bp Ori: CRO92514.1 Gene: cptB Feature: domain Description: SdhE Location: 65064-65304 bp Feature: domain Description: SdhE Location: 65064-653 04 bp Feature: gene Location: 65296-65748 bp Sorry, your browser does not support inline SVG.
Associated domains:Seq: CVUY01000289.1 Pseudomonas aeruginosa genome assembly P1_London_28_IMP_1_04_05, contig P1_London_28_IMP_1_04_05_contig299, whole genome shotgun sequence (32153 bp)
Overview 1 RT 1: 4561-11371 bp Neighborhood of RT #1 [4561, 11568] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4561-5388 bp Ori: CRQ20316.1 Gene: glnQ_3 Feature: domain Description: ABC_phnC Location: 4591-5305 bp Feature: domain Description: ABC_phnC Location: 4 591-5305 bp Feature: gene Location: 5731-6372 bp Ori: CRQ20339.1 Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: domain Description: DUF772 Location: 5881-6076 bp Feature: gene Location: 6761-8029 bp Ori: CRQ20359.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974-7631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6974 -7631 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: domain Description: GIIM Note: maturase Location: 7709-7931 bp Feature: gene Location: 8761-8940 bp Feature: gene Location: 10024-11568 bp Ori: CRQ20397.1 Feature: domain Description: CHD Location: 10240-10654 bp Feature: domain Description: CHD Location: 1024 0-10654 bp Feature: domain Description: CHD Location: 10882-11371 bp Feature: domain Description: CHD Location: 10882-11371 bp Sorry, your browser does not support inline SVG.
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