myRT

myRT report for GCA_001180365.1_P2_London_28_IMP_1_06_05

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Seq: CVWC01000399.1 Pseudomonas aeruginosa genome assembly P2_London_28_IMP_1_06_05, contig P2_London_28_IMP_1_06_05_contig404, whole genome shotgun sequence (26956 bp)
Overview 1 RT 1: 520-6160 bp Neighborhood of RT #1 [520, 6357] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 520-1161 bp Ori: CRQ55036.1 Feature: domain Description: DUF772 Location: 670-865 bp Feature: domain Description: DUF772 Location: 670-865 bp Feature: gene Location: 1550-2818 bp Ori: CRQ55052.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1763-2420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 763-2420 bp Feature: domain Description: GIIM Note: maturase Location: 2498-2720 bp Feature: domain Description: GIIM Note: maturase Location: 2498-2720 bp Feature: gene Location: 3550-3729 bp Feature: gene Location: 4813-6357 bp Ori: CRQ55098.1 Feature: domain Description: CHD Location: 5029-5443 bp Feature: domain Description: CHD Location: 5029-5443 bp Feature: domain Description: CHD Location: 5671-6160 bp Feature: domain Description: CHD Location: 5671 -61 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVWC01000029.1 Pseudomonas aeruginosa genome assembly P2_London_28_IMP_1_06_05, contig P2_London_28_IMP_1_06_05_contig29, whole genome shotgun sequence (20637 bp)
Overview 1 RT 1: 66-7594 bp Neighborhood of RT #1 [66, 7608] LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 66-710 bp Feature: gene Location: 703-3474 bp Ori: CRO46577.1 Gene: lptD Feature: domain Description: LptD Location: 898-3460 bp Feature: domain Description: LptD Location: 898-3460 bp Feature: gene Location: 3607-4917 bp Ori: CRO46617.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3610-4186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3610-4186 bp Feature: domain Description: YkfC Location: 4396-4549 bp Feature: domain Description: YkfC Location: 4396-4549 bp Feature: domain Description: HNH Note: nucleases Location: 4723-4861 bp Feature: domain Description: HNH Note: nucleases Location: 472 3-4861 bp Feature: gene Location: 6161-6295 bp Feature: gene Location: 6592-7608 bp Ori: CRO46682.1 Feature: domain Description: COG3178 Location: 6595-7594 bp Feature: domain Description: COG3178 Location: 6595-7594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LptD (COG1452), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVWC01000047.1 Pseudomonas aeruginosa genome assembly P2_London_28_IMP_1_06_05, contig P2_London_28_IMP_1_06_05_contig47, whole genome shotgun sequence (17406 bp)
Overview 1 RT 1: 7238-15410 bp Neighborhood of RT #1 [7238, 15604] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 7238-9109 bp Ori: CRO65688.1 Feature: domain Description: DUF262 Location: 7286-8054 bp Feature: domain Description: DUF262 Location: 7286-8054 bp Feature: gene Location: 9113-9976 bp Ori: CRO65726.1 Feature: domain Description: YeeA Location: 9137-9842 bp Feature: domain Description: YeeA Location: 913 7-9842 bp Feature: gene Location: 10891-13911 bp Ori: CRO65758.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 11386-11857 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 113 86-11857 bp Feature: gene Location: 13908-14465 bp Feature: gene Location: 14465-15604 bp Ori: CRO65849.1 Feature: domain Description: AAA_21 Location: 14537-14606 bp Feature: domain Description: AAA_21 Location: 1453 7-14606 bp Feature: domain Description: AAA_21 Location: 15080-15410 bp Feature: domain Description: AAA_21 Location: 15080-15410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CVWC01000359.1 Pseudomonas aeruginosa genome assembly P2_London_28_IMP_1_06_05, contig P2_London_28_IMP_1_06_05_contig364, whole genome shotgun sequence (91235 bp)
Overview 1 RT 1: 40834-46518 bp Neighborhood of RT #1 [40834, 46523] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40834-41286 bp Feature: gene Location: 41270-41524 bp Ori: CRQ21964.1 Gene: cptB Feature: domain Description: SdhE Location: 41276-41516 bp Feature: domain Description: SdhE Location: 4 1276-4 1516 bp Feature: gene Location: 41600-42919 bp Ori: CRQ21989.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603-42179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 1603-4 2179 bp Feature: domain Description: YkfC Location: 42377-42533 bp Feature: domain Description: YkfC Location: 4 2377-4 2533 bp Feature: domain Description: HNH Note: nucleases Location: 42716-42854 bp Feature: domain Description: HNH Note: nucleases Location: 4 2716-4 2854 bp Feature: gene Location: 44642-45586 bp Ori: CRQ22013.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: domain Description: YgfZ Location: 4 4 651-4 5551 bp Feature: gene Location: 45687-46523 bp Ori: CRQ22041.1 Feature: domain Description: HDOD Location: 45690-46518 bp Feature: domain Description: HDOD Location: 4 5690-4 6518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CVWC01000400.1 Pseudomonas aeruginosa genome assembly P2_London_28_IMP_1_06_05, contig P2_London_28_IMP_1_06_05_contig405, whole genome shotgun sequence (26954 bp)
Overview 1 RT 1: 1192-10117 bp Neighborhood of RT #1 [1192, 10119] RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 1192-1353 bp Feature: gene Location: 1656-3341 bp Ori: CRQ55554.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 1713-1953 bp Feature: domain Description: RVT_N Location: 1713-195 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2001-2637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2001-2637 bp Feature: domain Description: GIIM Note: maturase Location: 2691-2922 bp Feature: domain Description: GIIM Note: maturase Location: 2691-2922 bp Feature: domain Description: HNH Note: nucleases Location: 3174-3312 bp Feature: domain Description: HNH Note: nucleases Location: 3174-3312 bp Feature: gene Location: 4422-8159 bp Ori: CRQ55569.1 Gene: cph2_9 Feature: domain Description: PBP2_BvgS_HisK_like Location: 4530-5187 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 45 30-5 187 bp Feature: domain Description: PRK09776 Location: 5400-5871 bp Feature: domain Description: PRK09776 Location: 5 400-5 871 bp Feature: domain Description: PAS Location: 5928-6453 bp Feature: domain Description: PAS Location: 5 928-645 3 bp Feature: domain Description: PRK10060 Location: 6465-8109 bp Feature: domain Description: PRK10060 Location: 6465 -8109 bp Feature: gene Location: 8266-10119 bp Ori: CRQ55586.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 8278-10117 bp Feature: domain Description: PRK05 65 8 Location: 8278-10117 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)