myRT

myRT report for GCA_001180405.1_P4_London_1_VIM_2_10_07

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Seq: CVWA01000307.1 Pseudomonas aeruginosa genome assembly P4_London_1_VIM_2_10_07, contig P4_London_1_VIM_2_10_07_contig315, whole genome shotgun sequence (43328 bp)
Overview 1 RT 1: 3993-10803 bp Neighborhood of RT #1 [3993, 11000] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 3993-4820 bp Ori: CRQ10661.1 Gene: glnQ_3 Feature: domain Description: ABC_phnC Location: 4023-4737 bp Feature: domain Description: ABC_phnC Location: 4023-4737 bp Feature: gene Location: 5163-5804 bp Ori: CRQ10695.1 Feature: domain Description: DUF772 Location: 5313-5508 bp Feature: domain Description: DUF772 Location: 531 3-5508 bp Feature: gene Location: 6193-7461 bp Ori: CRQ10719.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6406-7063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6406-7063 bp Feature: domain Description: GIIM Note: maturase Location: 7141-7363 bp Feature: domain Description: GIIM Note: maturase Location: 71 41 -7363 bp Feature: gene Location: 8193-8372 bp Feature: gene Location: 9456-11000 bp Ori: CRQ10782.1 Feature: domain Description: CHD Location: 9672-10086 bp Feature: domain Description: CHD Location: 9672-1 0086 bp Feature: domain Description: CHD Location: 10314-10803 bp Feature: domain Description: CHD Location: 1 031 4-1 0803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVWA01000044.1 Pseudomonas aeruginosa genome assembly P4_London_1_VIM_2_10_07, contig P4_London_1_VIM_2_10_07_contig44, whole genome shotgun sequence (117693 bp)
Overview 1 RT 1: 41847-47536 bp Neighborhood of RT #1 [41847, 47536] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 41847-42683 bp Ori: CRO40807.1 Feature: domain Description: HDOD Location: 41850-42678 bp Feature: domain Description: HDOD Location: 41850-42 678 bp Feature: gene Location: 42784-43728 bp Ori: CRO40841.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 42793-43693 bp Feature: domain Description: YgfZ Location: 42 793-43693 bp Feature: gene Location: 45451-46770 bp Ori: CRO40876.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45454-46030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45454-46030 bp Feature: domain Description: YkfC Location: 46228-46384 bp Feature: domain Description: YkfC Location: 462 2 8-46384 bp Feature: domain Description: HNH Note: nucleases Location: 46567-46705 bp Feature: domain Description: HNH Note: nucleases Location: 46567-46705 bp Feature: gene Location: 46846-47100 bp Ori: CRO40984.1 Gene: cptB Feature: domain Description: SdhE Location: 46852-47092 bp Feature: domain Description: SdhE Location: 46852 -47092 bp Feature: gene Location: 47084-47536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVWA01000004.1 Pseudomonas aeruginosa genome assembly P4_London_1_VIM_2_10_07, contig P4_London_1_VIM_2_10_07_contig4, whole genome shotgun sequence (17480 bp)
Overview 1 RT 1: 1803-9114 bp Neighborhood of RT #1 [1803, 10169] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1803-2942 bp Ori: CRO03346.1 Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 1875-1944 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: domain Description: AAA_21 Location: 2418-2748 bp Feature: gene Location: 2942-3499 bp Feature: gene Location: 3496-6516 bp Ori: CRO03404.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3991-4462 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 991-4462 bp Feature: gene Location: 7431-8294 bp Ori: CRO03438.1 Feature: domain Description: YeeA Location: 7455-8160 bp Feature: domain Description: YeeA Location: 7455-8160 bp Feature: gene Location: 8298-10169 bp Ori: CRO03475.1 Feature: domain Description: DUF262 Location: 8346-9114 bp Feature: domain Description: DUF262 Location: 83 46-9114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CVWA01000188.1 Pseudomonas aeruginosa genome assembly P4_London_1_VIM_2_10_07, contig P4_London_1_VIM_2_10_07_contig188, whole genome shotgun sequence (80238 bp)
Overview 1 RT 1: 49944-58114 bp Neighborhood of RT #1 [49944, 58122] COG3178 RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 49944-50960 bp Ori: CRP24262.1 Feature: domain Description: COG3178 Location: 49947-50946 bp Feature: domain Description: COG3178 Location: 4 994 7-5094 6 bp Feature: gene Location: 51257-51391 bp Feature: gene Location: 52635-53945 bp Ori: CRP24323.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52638-53214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52638-53214 bp Feature: domain Description: YkfC Location: 53424-53577 bp Feature: domain Description: YkfC Location: 534 24 -53577 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: gene Location: 54078-56849 bp Ori: CRP24364.1 Gene: lptD Feature: domain Description: LptD Location: 54273-56835 bp Feature: domain Description: LptD Location: 54 273-56835 bp Feature: gene Location: 56830-58122 bp Ori: CRP24427.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: domain Description: PRK10770 Location: 56920-58114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: CVWA01000315.1 Pseudomonas aeruginosa genome assembly P4_London_1_VIM_2_10_07, contig P4_London_1_VIM_2_10_07_contig323, whole genome shotgun sequence (201723 bp)
Overview 1 RT 1: 949-4467 bp Neighborhood of RT #1 [949, 4478] RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 949-2634 bp Ori: CRQ18372.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 1006-1246 bp Feature: domain Description: RVT_N Location: 1006-1246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1294-1930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1294-1930 bp Feature: domain Description: GIIM Note: maturase Location: 1984-2215 bp Feature: domain Description: GIIM Note: maturase Location: 1984-2215 bp Feature: domain Description: HNH Note: nucleases Location: 2467-2605 bp Feature: domain Description: HNH Note: nucleases Location: 2467-2605 bp Feature: gene Location: 2937-3098 bp Feature: gene Location: 3357-4478 bp Ori: CRQ18437.1 Feature: domain Description: COG3177 Location: 3375-4467 bp Feature: domain Description: COG3177 Location: 3375 -4467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )