myRT

myRT report for GCA_001180425.1_P5_London_26_VIM_2_01_09

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Seq: CVWS01000069.1 Pseudomonas aeruginosa genome assembly P5_London_26_VIM_2_01_09, contig P5_London_26_VIM_2_01_09_contig69, whole genome shotgun sequence (14053 bp)
Overview 1 RT 1: 20-5660 bp Neighborhood of RT #1 [20, 5857] DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 20-661 bp Ori: CRR59341.1 Feature: domain Description: DUF772 Location: 170-365 bp Feature: domain Description: DUF772 Location: 1 70-365 bp Feature: gene Location: 1050-2318 bp Ori: CRR59353.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263-1920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 263-1 920 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2220 bp Feature: domain Description: GIIM Note: maturase Location: 1 998-2220 bp Feature: gene Location: 3050-3229 bp Feature: gene Location: 4313-5857 bp Ori: CRR59377.1 Feature: domain Description: CHD Location: 4529-4943 bp Feature: domain Description: CHD Location: 4529-4943 bp Feature: domain Description: CHD Location: 5171-5660 bp Feature: domain Description: CHD Location: 51 71 -5660 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)

Seq: CVWS01000087.1 Pseudomonas aeruginosa genome assembly P5_London_26_VIM_2_01_09, contig P5_London_26_VIM_2_01_09_contig87, whole genome shotgun sequence (12924 bp)
Overview 1 RT 1: 2667-10831 bp Neighborhood of RT #1 [2667, 10845] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 2667-3959 bp Ori: CRR64687.1 Gene: surA_1 Feature: domain Description: PRK10770 Location: 2757-3951 bp Feature: domain Description: PRK10770 Location: 2 757-3951 bp Feature: gene Location: 3940-6711 bp Ori: CRR64705.1 Gene: lptD Feature: domain Description: LptD Location: 4135-6697 bp Feature: domain Description: LptD Location: 4135-6697 bp Feature: gene Location: 6844-8154 bp Ori: CRR64725.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6847-7423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6847-742 3 bp Feature: domain Description: YkfC Location: 7633-7786 bp Feature: domain Description: YkfC Location: 7633-7786 bp Feature: domain Description: HNH Note: nucleases Location: 7960-8098 bp Feature: domain Description: HNH Note: nucleases Location: 7960-8098 bp Feature: gene Location: 9398-9532 bp Feature: gene Location: 9829-10845 bp Ori: CRR64751.1 Feature: domain Description: COG3178 Location: 9832-10831 bp Feature: domain Description: COG3178 Location: 9832 -10831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT-GII, YkfC (COG3344), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CVWS01000727.1 Pseudomonas aeruginosa genome assembly P5_London_26_VIM_2_01_09, contig P5_London_26_VIM_2_01_09_contig795, whole genome shotgun sequence (23572 bp)
Overview 1 RT 1: 1851-9162 bp Neighborhood of RT #1 [1851, 10217] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 1851-2990 bp Ori: CRS28053.1 Feature: domain Description: AAA_21 Location: 1923-1992 bp Feature: domain Description: AAA_21 Location: 1923 -1992 bp Feature: domain Description: AAA_21 Location: 2466-2796 bp Feature: domain Description: AAA_21 Location: 2466-2796 bp Feature: gene Location: 2990-3547 bp Feature: gene Location: 3544-6564 bp Ori: CRS28079.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4039-4510 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 403 9-4510 bp Feature: gene Location: 7479-8342 bp Ori: CRS28090.1 Feature: domain Description: YeeA Location: 7503-8208 bp Feature: domain Description: YeeA Location: 7503 -8208 bp Feature: gene Location: 8346-10217 bp Ori: CRS28100.1 Feature: domain Description: DUF262 Location: 8394-9162 bp Feature: domain Description: DUF262 Location: 83 94-9162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: CVWS01000244.1 Pseudomonas aeruginosa genome assembly P5_London_26_VIM_2_01_09, contig P5_London_26_VIM_2_01_09_contig244, whole genome shotgun sequence (41632 bp)
Overview 1 RT 1: 19482-25171 bp Neighborhood of RT #1 [19482, 25171] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 19482-20318 bp Ori: CRS02564.1 Feature: domain Description: HDOD Location: 19485-20313 bp Feature: domain Description: HDOD Location: 194 85-20313 bp Feature: gene Location: 20419-21363 bp Ori: CRS02575.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 20428-21328 bp Feature: domain Description: YgfZ Location: 204 28-21328 bp Feature: gene Location: 23086-24405 bp Ori: CRS02603.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23089-23665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23089-23665 bp Feature: domain Description: YkfC Location: 23863-24019 bp Feature: domain Description: YkfC Location: 23863-24 019 bp Feature: domain Description: HNH Note: nucleases Location: 24202-24340 bp Feature: domain Description: HNH Note: nucleases Location: 24 202-24 34 0 bp Feature: gene Location: 24481-24735 bp Ori: CRS02619.1 Gene: cptB Feature: domain Description: SdhE Location: 24487-24727 bp Feature: domain Description: SdhE Location: 24 4 87-24 727 bp Feature: gene Location: 24719-25171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: CVWS01000157.1 Pseudomonas aeruginosa genome assembly P5_London_26_VIM_2_01_09, contig P5_London_26_VIM_2_01_09_contig157, whole genome shotgun sequence (9467 bp)
Overview 1 RT 1: 120-8267 bp Neighborhood of RT #1 [120, 8267] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH Feature: gene Location: 120-1193 bp Ori: CRR86196.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 129-1191 bp Feature: domain Description: PRK05 65 8 Location: 129-1191 bp Feature: gene Location: 1300-5037 bp Ori: CRR86211.1 Gene: cph2_4 Feature: domain Description: PBP2_BvgS_HisK_like Location: 1408-2065 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1408-2065 bp Feature: domain Description: PRK09776 Location: 2278-2749 bp Feature: domain Description: PRK09776 Location: 2278-2749 bp Feature: domain Description: PAS Location: 2806-3331 bp Feature: domain Description: PAS Location: 2806-3331 bp Feature: domain Description: PRK10060 Location: 3343-4987 bp Feature: domain Description: PRK10060 Location: 3343-4987 bp Feature: gene Location: 6118-7803 bp Ori: CRR86223.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 6175-6415 bp Feature: domain Description: RVT_N Location: 6175 -6415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6463-7099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6463-7099 bp Feature: domain Description: GIIM Note: maturase Location: 7153-7384 bp Feature: domain Description: GIIM Note: maturase Location: 715 3-7384 bp Feature: domain Description: HNH Note: nucleases Location: 7636-7774 bp Feature: domain Description: HNH Note: nucleases Location: 7636-7774 bp Feature: gene Location: 8106-8267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)