myRT

myRT report for GCA_001180445.1_E1_London_17_VIM_2_02_09

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Seq: CWGH01000144.1 Pseudomonas aeruginosa genome assembly E1_London_17_VIM_2_02_09, contig E1_London_17_VIM_2_02_09_contig144, whole genome shotgun sequence (88369 bp)
Overview 1 RT 1: 40834-46518 bp Neighborhood of RT #1 [40834, 46523] SdhE RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 40834-41286 bp Feature: gene Location: 41270-41524 bp Ori: CRX32310.1 Gene: cptB Feature: domain Description: SdhE Location: 41276-41516 bp Feature: domain Description: SdhE Location: 41 276-41 51 6 bp Feature: gene Location: 41600-42919 bp Ori: CRX32311.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41603-42179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 603-421 79 bp Feature: domain Description: YkfC Location: 42377-42533 bp Feature: domain Description: YkfC Location: 42377-42533 bp Feature: domain Description: HNH Note: nucleases Location: 42716-42854 bp Feature: domain Description: HNH Note: nucleases Location: 4271 6-42854 bp Feature: gene Location: 44642-45586 bp Ori: CRX32312.1 Gene: ygfZ Feature: domain Description: YgfZ Location: 44651-45551 bp Feature: domain Description: YgfZ Location: 44651 -45551 bp Feature: gene Location: 45687-46523 bp Ori: CRX32313.1 Feature: domain Description: HDOD Location: 45690-46518 bp Feature: domain Description: HDOD Location: 45690-4651 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, YkfC (COG3344), HNH (pfam01844), YgfZ (COG0354), HDOD (pfam08668)

Seq: CWGH01000166.1 Pseudomonas aeruginosa genome assembly E1_London_17_VIM_2_02_09, contig E1_London_17_VIM_2_02_09_contig166, whole genome shotgun sequence (87165 bp)
Overview 1 RT 1: 2481-12786 bp 2 RT 2: 29044-37208 bp Neighborhood of RT #1 [2481, 12788] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [29044, 37222] PRK10770 LptD RVT-GII YkfC HNH COG3178 Feature: gene Location: 2481-3602 bp Ori: CRX32445.1 Feature: domain Description: COG3177 Location: 2499-3591 bp Feature: domain Description: COG3177 Location: 2 499-3591 bp Feature: gene Location: 3861-4022 bp Feature: gene Location: 4325-6010 bp Ori: CRX32447.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 4382-4622 bp Feature: domain Description: RVT_N Location: 4382 -462 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4670-5306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4670-5306 bp Feature: domain Description: GIIM Note: maturase Location: 5360-5591 bp Feature: domain Description: GIIM Note: maturase Location: 5360-5591 bp Feature: domain Description: HNH Note: nucleases Location: 5843-5981 bp Feature: domain Description: HNH Note: nucleases Location: 5843-5981 bp Feature: gene Location: 7091-10828 bp Ori: CRX32448.1 Gene: cph2_3 Feature: domain Description: PBP2_BvgS_HisK_like Location: 7199-7856 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 7199-7856 bp Feature: domain Description: PRK09776 Location: 8069-8540 bp Feature: domain Description: PRK09776 Location: 8069-8540 bp Feature: domain Description: PAS Location: 8597-9122 bp Feature: domain Description: PAS Location: 8597-912 2 bp Feature: domain Description: PRK10060 Location: 9134-10778 bp Feature: domain Description: PRK10060 Location: 9134-10778 bp Feature: gene Location: 10935-12788 bp Ori: CRX32449.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 10947-12786 bp Feature: domain Description: PRK05658 Location: 10947-12 786 bp Feature: gene Location: 29044-30336 bp Ori: CRX32467.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 29134-30328 bp Feature: domain Description: PRK10770 Location: 2 9134-3032 8 bp Feature: gene Location: 30317-33088 bp Ori: CRX32468.1 Gene: lptD Feature: domain Description: LptD Location: 30512-33074 bp Feature: domain Description: LptD Location: 30512 -33074 bp Feature: gene Location: 33221-34531 bp Ori: CRX32469.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33224-33800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332 2 4-33800 bp Feature: domain Description: YkfC Location: 34010-34163 bp Feature: domain Description: YkfC Location: 34010-34163 bp Feature: domain Description: HNH Note: nucleases Location: 34337-34475 bp Feature: domain Description: HNH Note: nucleases Location: 34337-34475 bp Feature: gene Location: 35775-35909 bp Feature: gene Location: 36206-37222 bp Ori: CRX32471.1 Feature: domain Description: COG3178 Location: 36209-37208 bp Feature: domain Description: COG3178 Location: 362 09-372 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )

Seq: CWGH01000243.1 Pseudomonas aeruginosa genome assembly E1_London_17_VIM_2_02_09, contig E1_London_17_VIM_2_02_09_contig251, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Ori: CRX35817.1 Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28548 bp Ori: CRX35818.1 Feature: domain Description: YeeA Location: 27709-28414 bp Feature: domain Description: YeeA Location: 27709-28414 bp Feature: gene Location: 29463-32483 bp Ori: CRX35819.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-3 0429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Ori: CRX35821.1 Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 3 3 109-3 3 178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 3 3 652-3 3 982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: CWGH01000227.1 Pseudomonas aeruginosa genome assembly E1_London_17_VIM_2_02_09, contig E1_London_17_VIM_2_02_09_contig235, whole genome shotgun sequence (43894 bp)
Overview 1 RT 1: 4560-11370 bp Neighborhood of RT #1 [4560, 11567] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Feature: gene Location: 4560-5387 bp Ori: CRX35131.1 Gene: glnQ_4 Feature: domain Description: ABC_phnC Location: 4590-5304 bp Feature: domain Description: ABC_phnC Location: 4 590-5304 bp Feature: gene Location: 5730-6371 bp Ori: CRX35132.1 Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: domain Description: DUF772 Location: 5880-6075 bp Feature: gene Location: 6760-8028 bp Ori: CRX35133.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6973-7630 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: domain Description: GIIM Note: maturase Location: 7708-7930 bp Feature: gene Location: 8760-8939 bp Feature: gene Location: 10023-11567 bp Ori: CRX35135.1 Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10239-10653 bp Feature: domain Description: CHD Location: 10881-11370 bp Feature: domain Description: CHD Location: 10881-11370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302)